Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 >seq3 Length=7792947 Score = 118 bits (130), Expect = 1e-21 Identities = 365/563 (65%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || |||||| || || || || || | || || ||||| ||||| | Sbjct 2175742 AGACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTC 2175801 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| || || ||||| | |||||| || | |||||| | || ||| Sbjct 2175802 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAG 2175861 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || ||||||||||| | |||||||| | | || | ||| | |||| | |||| Sbjct 2175862 AAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCC 2175921 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| |||| || || || | | || ||| || || || | ||| Sbjct 2175922 TGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCG 2175981 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATA---TCGATTATATACGTATCAATCAGTAAACTG 16495 || || | | | | ||| | || | || || ||||| || || | | Sbjct 2175982 TTGAAGAGGTA---TGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAG 2176038 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 || |||| ||||| |||||||| || ||||| || |||||||||||||||||||| Sbjct 2176039 TATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCG 2176098 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || || || || ||||| || | || |||||||| ||||| ||||| Sbjct 2176099 GGGATCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAG 2176158 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA---GAATA 16672 ||||| || || || | ||||| ||||| |||| ||||| || || | | | Sbjct 2176159 GCAGCGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTG 2176218 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 | ||| || | | ||| ||||| | ||| | || || | ||||| ||| ||| || Sbjct 2176219 TTCCAGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCT 2176278 Query 16733 GCCTTTTTATACATTTTCCAAAT 16755 ||||| || ||||||| ||| || Sbjct 2176279 GCCTTCTTGTACATTTGCCAGAT 2176301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414361643920