Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 233 2e-56 seq2 138 1e-27 seq1 129 6e-25 >seq3 Length=7792947 Score = 233 bits (258), Expect = 2e-56 Identities = 397/564 (70%), Gaps = 15/564 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 2176301 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2176242 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACA-ACGAGCGCCATTTCATCA 116750 |||||||| | | | ||||||| | || |||| | || |||||| | |||||| Sbjct 2176241 TCCAAGGATCTCCA-CGACTGGAACAACCGATTGA-CTTCAGACGAGCAATACTTCATCT 2176184 Query 116751 AGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGC 116810 ||| | || || || ||||| ||| ||||||||||||||| |||||||| || |||| Sbjct 2176183 CCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGAGC 2176124 Query 116811 GTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 | ||| ||||| ||| | ||||||| || |||||||| || || |||||| | Sbjct 2176123 GATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGA 2176064 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTT 116927 |||||||| | ||||| |||| || || ||||||||| || ||| | | | || Sbjct 2176063 TGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCCTG 2176004 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | | | | | | | || |||||| | || || || || ||| || | |||||| Sbjct 2176003 CCCA-GCGTACATAC--CTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGG 2175947 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTG 117046 | || ||||| | || |||||| | || || | | |||||| |||| || || Sbjct 2175946 CGGATTGGGCCATCCGATGGATC-CAGGATAAGAACTCTACCTTCGCTCAGCGTCTTGTT 2175888 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || ||||| ||||| ||||||| || || || |||| || |||||| Sbjct 2175887 GCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTC 2175828 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || ||||||||||| || |||| || ||||||||||| || | || ||| Sbjct 2175827 AAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGATGAG 2175768 Query 117167 GGTCTGCATTGCGACTTTGCCTGT 117190 ||||| || ||||||||||||| Sbjct 2175767 GGTCTTCACACCGACTTTGCCTGT 2175744 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 6169948 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 6169889 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||| |||||| ||||||| Sbjct 6169888 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 6169830 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || ||||| || || | |||||||| | ||||||||| Sbjct 6169829 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 6169770 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||| || || Sbjct 6169769 CATCCAGAAGGAGTCCACCCTTCA 6169746 >seq2 Length=8997558 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 2573209 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGTCATCC 2573150 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| ||||||||||| | || ||| Sbjct 2573149 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAG 2573090 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| ||||| ||||| || || | ||||||||| |||||||||| Sbjct 2573089 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 2573030 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 2573029 ATCCAGAAGGAGTCGACTCTCCACCTCGT 2573001 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || | || ||||| ||||||||| | || ||||| | |||||| | Sbjct 2572917 TCGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCCGACACTATCG 2572858 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||| ||||| | || ||||| ||| | Sbjct 2572857 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGATTG 2572799 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | ||| ||||| ||||| || |||| || |||||| ||||||||||||||||||| Sbjct 2572798 ATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGAACCCTCTCCGACTACAACATCCAGAAG 2572739 Query 40879 GAGGCCACGCTGCATCTAGT 40898 || | || || || || || Sbjct 2572738 GAATCAACCCTTCACCTGGT 2572719 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || || ||| |||| || || | | Sbjct 2573437 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCATCT 2573378 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || |||| ||||| ||||||||||| | || || Sbjct 2573377 GATACTATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCA 2573319 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | || | ||| ||||| ||||| || || | ||||||||| ||| ||||| Sbjct 2573318 GCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAA 2573259 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 2573258 CATTCAGAAGGAGTCGACTCTCCACCTCGT 2573229 >seq1 Length=11760891 Score = 129 bits (142), Expect = 6e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| | | |||| | | Sbjct 6455596 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGACACCATC 6455655 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| |||| ||||| ||| | Sbjct 6455656 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGATTG 6455715 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | || |||||| ||||||||||||||||||| Sbjct 6455716 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 6455775 Query 40879 G 40879 | Sbjct 6455776 G 6455776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219161358560