Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 163 4e-35 >seq3 Length=7792947 Score = 163 bits (180), Expect = 4e-35 Identities = 374/559 (67%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| |||||||| || | | ||| | ||||||||||| | || Sbjct 2175744 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 2175803 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||||||||| || ||||| || |||||||| || | ||| ||||| Sbjct 2175804 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2175863 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 33757 ||| || || || |||||||| |||| ||| | || | | | | | || || Sbjct 2175864 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 2175923 Query 33758 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| | || |||||||| ||||||||| | ||||| || || || | ||| | Sbjct 2175924 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2175982 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 | ||||| || | | | || || | || |||||||| | || || Sbjct 2175983 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2176042 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 |||| || || ||||| || || ||||| || || ||||| |||| |||||||| | Sbjct 2176043 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2176102 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 |||| || || | ||||| || | | ||| ||||| || || || || ||| | Sbjct 2176103 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 2176162 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT---TAGTTTATTCC 34053 | || || || | | || || || |||| ||||||| || | | || |||| Sbjct 2176163 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 2176222 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || | || ||| || || | ||| | || || ||||||| || || |||||||||| Sbjct 2176223 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2176282 Query 34114 TTTTATACATATTCCAGAT 34132 | || ||||| | |||||| Sbjct 2176283 TCTTGTACATTTGCCAGAT 2176301 Score = 150 bits (166), Expect = 2e-31 Identities = 453/694 (65%), Gaps = 4/694 (1%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| ||||| | || ||||| | | ||| || |||| || || || ||||| || Sbjct 1387032 AGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAA 1386973 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||||| ||||||||||||| || || || | | | ||||| || || Sbjct 1386972 AAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTG 1386913 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||||| ||||| |||||| | | | || | ||||| ||||| | ||| ||||| Sbjct 1386912 ATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGC 1386853 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | ||||| || ||||| || ||||| || | ||| | ||| ||||| || | || Sbjct 1386852 GAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 1386793 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | || ||| |||| |||||||| || ||||||||||||||| ||| || ||| | Sbjct 1386792 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 1386733 Query 63521 GGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 |||||| || | | | | | || || || || ||||| || || || | || | Sbjct 1386732 GGCACGGAT-TCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCAC 1386674 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | || | || || ||||| || || ||||| || || |||| | || || || | Sbjct 1386673 AAGTCTTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 1386614 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | || | || | | | ||| || || || ||||| || || || || || | Sbjct 1386613 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 1386554 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63758 | | || || | || ||||| ||||| | | || ||||| || | Sbjct 1386553 AGAACTTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG- 1386495 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 ||||| || ||||| ||||| | ||| ||||| || | ||| |||||||| || || Sbjct 1386494 ATTCCAACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATC 1386435 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 | | |||||| ||| | ||| ||| || |||||||||||||| ||||| || Sbjct 1386434 TGTAGCAAGTATGATCTGGACAAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGA 1386375 Query 63879 TCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912 || || | ||| | || | ||| | || |||| Sbjct 1386374 TCATAGACAATCGCTGAGTCGAGTTCCTCTTTAT 1386341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817552763680