Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq3 163 4e-35
>seq3
Length=7792947
Score = 163 bits (180), Expect = 4e-35
Identities = 374/559 (67%), Gaps = 8/559 (1%)
Strand=Plus/Plus
Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640
||| || || ||| ||| |||||||| || | | ||| | ||||||||||| | ||
Sbjct 2175744 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 2175803
Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700
|| ||||| ||||||||||| || ||||| || |||||||| || | ||| |||||
Sbjct 2175804 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2175863
Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 33757
||| || || || |||||||| |||| ||| | || | | | | | || ||
Sbjct 2175864 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 2175923
Query 33758 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816
||||| | || |||||||| ||||||||| | ||||| || || || | ||| |
Sbjct 2175924 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2175982
Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876
| ||||| || | | | || || | || |||||||| | || ||
Sbjct 2175983 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2176042
Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936
|||| || || ||||| || || ||||| || || ||||| |||| |||||||| |
Sbjct 2176043 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2176102
Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996
|||| || || | ||||| || | | ||| ||||| || || || || ||| |
Sbjct 2176103 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 2176162
Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT---TAGTTTATTCC 34053
| || || || | | || || || |||| ||||||| || | | || ||||
Sbjct 2176163 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 2176222
Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| || | || ||| || || | ||| | || || ||||||| || || ||||||||||
Sbjct 2176223 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2176282
Query 34114 TTTTATACATATTCCAGAT 34132
| || ||||| | ||||||
Sbjct 2176283 TCTTGTACATTTGCCAGAT 2176301
Score = 150 bits (166), Expect = 2e-31
Identities = 453/694 (65%), Gaps = 4/694 (1%)
Strand=Plus/Minus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| ||||| | || ||||| | | ||| || |||| || || || ||||| ||
Sbjct 1387032 AGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAA 1386973
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
|||||||| ||||||||||||| || || || | | | ||||| || ||
Sbjct 1386972 AAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTG 1386913
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||||| ||||| |||||| | | | || | ||||| ||||| | ||| |||||
Sbjct 1386912 ATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGC 1386853
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | ||||| || ||||| || ||||| || | ||| | ||| ||||| || | ||
Sbjct 1386852 GAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 1386793
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
| || ||| |||| |||||||| || ||||||||||||||| ||| || ||| |
Sbjct 1386792 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 1386733
Query 63521 GGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
|||||| || | | | | | || || || || ||||| || || || | || |
Sbjct 1386732 GGCACGGAT-TCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCAC 1386674
Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639
| || | || || ||||| || || ||||| || || |||| | || || || |
Sbjct 1386673 AAGTCTTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 1386614
Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699
| || | || | | | ||| || || || ||||| || || || || || |
Sbjct 1386613 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 1386554
Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63758
| | || || | || ||||| ||||| | | || ||||| || |
Sbjct 1386553 AGAACTTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG- 1386495
Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818
||||| || ||||| ||||| | ||| ||||| || | ||| |||||||| || ||
Sbjct 1386494 ATTCCAACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATC 1386435
Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878
| | |||||| ||| | ||| ||| || |||||||||||||| ||||| ||
Sbjct 1386434 TGTAGCAAGTATGATCTGGACAAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGA 1386375
Query 63879 TCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912
|| || | ||| | || | ||| | || ||||
Sbjct 1386374 TCATAGACAATCGCTGAGTCGAGTTCCTCTTTAT 1386341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817552763680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |