Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 152 7e-32 >seq3 Length=7792947 Score = 152 bits (168), Expect = 7e-32 Identities = 626/973 (64%), Gaps = 18/973 (2%) Strand=Plus/Minus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || || || || ||||| || ||||||| || || |||| || || |||||||| Sbjct 1387304 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 1387245 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 || || | |||||| || | || | ||| |||||||| || || |||| Sbjct 1387244 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATCC 1387185 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || || || || || | || || || |||| | || | ||| || | ||| | | Sbjct 1387184 TTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA-G 1387126 Query 71884 ACTC-GAGCCTTTATTATATTCTTGTATCTCTTT---TCTCTTTCGTATTGT--GTATAT 71937 || ||||||| || | |||| | ||| ||||| ||||| | | ||| | Sbjct 1387125 TTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 1387069 Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT-CCAGGACATTCATTCGGACACAT 71996 | | || || ||||| || | ||| | || ||||| ||||| || || ||||| Sbjct 1387068 AGCC--TCAAATTCGTCACCGTA-GCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACAT 1387012 Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 | | ||| || || | | || || ||||| || |||||||| ||||||||||| Sbjct 1387011 GAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 1386952 Query 72057 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 || || || || | | | |||||| || || ||||||| ||||| ||||| Sbjct 1386951 TAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 1386892 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | | || | ||||| ||||| | ||| ||||| | | || || || ||||| Sbjct 1386891 CTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 1386832 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| Sbjct 1386831 ACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACC 1386772 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| | ||||||||| |||| ||| || ||| ||||||| || | | | | Sbjct 1386771 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 1386713 Query 72297 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 | | || || || || ||||| || || || | || || || | ||||| |||| Sbjct 1386712 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 1386653 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 | || || || || || ||| |||| | || || || || || | || | | Sbjct 1386652 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTG 1386593 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 ||| || || || ||||| || || || || || || | || |||| || | Sbjct 1386592 GAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGT 1386533 Query 72476 TGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATT 72534 |||| ||||| | | || ||||| || | ||||| || ||||| ||||| Sbjct 1386532 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATG 1386474 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 | ||||||||| || | ||| | || ||| | || | | |||||| ||| | | Sbjct 1386473 ATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGAC 1386414 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 72654 || ||| || |||||||||||||| ||||| || || || | ||| | || | | Sbjct 1386413 AAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCG 1386354 Query 72655 AGTTTATCCTTAT 72667 |||| || |||| Sbjct 1386353 AGTTCCTCTTTAT 1386341 Score = 136 bits (150), Expect = 5e-27 Identities = 368/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||| ||| ||||||||||| | | ||| | ||||| ||||| | || Sbjct 2175744 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 2175803 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| ||||||||||| || ||||| || || || ||||| | || ||||| Sbjct 2175804 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2175863 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATG 42240 ||| || || || || ||||| |||| ||| | || | | | | | || || Sbjct 2175864 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 2175923 Query 42241 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| | || |||||||| ||||||||| | ||||| || || || | ||| | Sbjct 2175924 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2175982 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 | ||||| || | | | || || | || |||||||| | || || Sbjct 2175983 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2176042 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 |||| || || ||||| || || ||||| || || ||||| |||| ||||||| | Sbjct 2176043 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2176102 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 ||| || || | ||||| ||| | | ||| || || || || ||||| ||| | Sbjct 2176103 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 2176162 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT---TTATTCC 42536 | || || || | | || || || |||| ||||| | || ||| || |||| Sbjct 2176163 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 2176222 Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 | || | || ||| || || | ||| | || || | ||||| || || || ||||||| Sbjct 2176223 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2176282 Query 42597 TTTTATACATATTCCAGAT 42615 | || ||||| | |||||| Sbjct 2176283 TCTTGTACATTTGCCAGAT 2176301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139149664560