Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq3 84.2 2e-11
seq2 82.4 6e-11
>seq3
Length=7792947
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || ||||| ||| |||||| || |||||||| || || | || || | |||||
Sbjct 6169740 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCGGCCATCCTC 6169798
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||||| | | || | |||||||| ||| || | || |||||||||
Sbjct 6169799 GAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 6169858
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||||| | ||||| |||| ||||||| ||| | || || || ||
Sbjct 6169859 GATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 6169918
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| || || || |||||||||||
Sbjct 6169919 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 6169948
>seq2
Length=8997558
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| |||||||||||||| | | || | ||||| |||||||| ||| || |
Sbjct 2573246 CTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 2573305
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
||| || ||||||||||| || | | ||||||||| ||| || ||||| |
Sbjct 2573306 AATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 2573365
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || || ||||| | ||||| ||||| || || || || ||||| | || ||
Sbjct 2573366 GTCG--ATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTG 2573423
Query 48713 ACAAAAATCTGCATCGTG 48730
|| || |||||||| |||
Sbjct 2573424 ACGAAGATCTGCATGGTG 2573441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251169196006
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |