Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 163 4e-35 >seq3 Length=7792947 Score = 163 bits (180), Expect = 4e-35 Identities = 374/559 (67%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||| |||||||| || | | ||| || ||||| ||||| | || Sbjct 2175744 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 2175803 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||||||||| || ||||| || |||||||| || | || ||||| Sbjct 2175804 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2175863 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 33479 ||| || || || |||||||| |||| ||| | || | | | | | || || Sbjct 2175864 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 2175923 Query 33480 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| | || |||||||| ||||||||| | ||||| || || || | ||| | Sbjct 2175924 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2175982 Query 33539 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33598 | ||||| || | | | || || | || |||||||| | || || Sbjct 2175983 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2176042 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 |||| || || ||||| || || ||||| || || ||||| |||| |||||||| | Sbjct 2176043 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2176102 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 |||| || || | ||||| || | | ||| ||||| || || ||||| ||| | Sbjct 2176103 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 2176162 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT---TAGTTTATTCC 33775 | || || || | | || || || |||| ||||||| || | | || |||| Sbjct 2176163 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 2176222 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || | || ||| || || | ||| | || || ||||||| || || |||||||||| Sbjct 2176223 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2176282 Query 33836 TTTTATACATGTTCCAGAT 33854 | || ||||| | |||||| Sbjct 2176283 TCTTGTACATTTGCCAGAT 2176301 Score = 161 bits (178), Expect = 1e-34 Identities = 629/973 (65%), Gaps = 18/973 (2%) Strand=Plus/Minus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62956 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 1387304 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1387246 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 || || | ||| || || | || | ||| |||||||| || || ||| Sbjct 1387245 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 1387186 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||| || || ||||| || | || || || |||| | || | ||| || | ||| | Sbjct 1387185 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1387127 Query 63077 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTT----TCTCTTTCGTATAGTGTATAC 63131 | || ||||||| || ||| ||| | |||| ||||| ||||| | ||| Sbjct 1387126 GTTTCTGAGCCTTGAT---AGACTTGCGAC-CCTTACCCTCTCTCTCGTACTTTTCGTAC 1387071 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACAT 63190 | || || ||||| || | || | ||| ||||| ||||| | || ||||| Sbjct 1387070 AGAGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACAT 1387012 Query 63191 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63250 | | ||| || |||| || || || ||||| || |||||||| ||||||||||| Sbjct 1387011 GAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGC 1386952 Query 63251 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310 || || || || | | | ||||| || || ||||||| ||||| ||||| Sbjct 1386951 TAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAA 1386892 Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370 | | | | || | ||||| ||||| | ||| ||||| | | ||||| || ||||| Sbjct 1386891 CTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTT 1386832 Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 || ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| Sbjct 1386831 ACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACC 1386772 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 ||| || ||||||||||||||| ||| || ||| ||||||| || | | | Sbjct 1386771 GTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGT 1386713 Query 63491 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 | | || || || || ||||| || || || | || || || | || || |||| Sbjct 1386712 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 1386653 Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609 |||| || ||||| || || |||| | || || || || || | || | | Sbjct 1386652 TACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTG 1386593 Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 ||| || || || ||||| || || || || || || | || || | || | Sbjct 1386592 GAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGT 1386533 Query 63670 TGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATT 63728 |||| ||||| | | || ||||| || | ||||| || ||||| ||||| Sbjct 1386532 TGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATG 1386474 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 | ||| ||||| || | ||| | || ||| || || | | |||||| ||| | | Sbjct 1386473 ATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGAC 1386414 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63848 || ||| || |||||||||||||| ||||| || || || | ||| | |||| | Sbjct 1386413 AAGGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCG 1386354 Query 63849 AGTTTATCCTTAT 63861 |||| || |||| Sbjct 1386353 AGTTCCTCTTTAT 1386341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947153278960