Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 168 8e-37 >seq3 Length=7792947 Score = 168 bits (186), Expect = 8e-37 Identities = 627/971 (65%), Gaps = 14/971 (1%) Strand=Plus/Minus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62811 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 1387304 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 1387246 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 || || | |||||| || | || | ||| |||||||| || || ||| Sbjct 1387245 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 1387186 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 ||| || || ||||| || | || || || |||| | || | ||| || | ||| | Sbjct 1387185 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAA- 1387127 Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACA 62987 | || ||||||| || ||| ||| | ||| ||||| ||||| | |||| Sbjct 1387126 GTTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACA 1387070 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047 || || ||||| || | | | || ||||| ||||| | || ||||| | Sbjct 1387069 GAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 1387010 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 | ||| || |||| || || || ||||| || |||||||| ||||||||||||| Sbjct 1387009 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 1386950 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 || || || | | | ||||| || || ||||||| ||||| |||||| Sbjct 1386949 AGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAACT 1386890 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | | || | ||||| ||||| | ||| ||||| | | ||||| || ||||| | Sbjct 1386889 CGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTAC 1386830 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 | ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| | Sbjct 1386829 CACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGT 1386770 Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 63346 |||| ||||||||||| || | ||| || ||| ||||||| || | | | | Sbjct 1386769 TGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGTTC 1386711 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || || || || ||||| || || || | || || || | ||||| ||||| Sbjct 1386710 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATA 1386651 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 || || || || || ||| |||| | || || || || || | || | | | Sbjct 1386650 CCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGA 1386591 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || ||||| || || || ||||| || | || || | || ||| Sbjct 1386590 GTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTG 1386531 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || ||||| | | || ||||| || | ||||| || ||||| ||||| | Sbjct 1386530 TATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGAT 1386472 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| ||||| || | ||| | || ||| || || | | |||||| ||| | ||| Sbjct 1386471 CATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACAA 1386412 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||| || |||||||||||||| ||||| || || || | ||| | |||| ||| Sbjct 1386411 GGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCGAG 1386352 Query 63706 TTTATCCTTAT 63716 || || |||| Sbjct 1386351 TTCCTCTTTAT 1386341 Score = 141 bits (156), Expect = 1e-28 Identities = 369/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || ||| ||| |||||||| || | | ||| | ||||| ||||| | || Sbjct 2175744 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 2175803 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 2175804 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2175863 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---G 32836 || || || || || ||||| |||| ||| | || | | | | | | || | Sbjct 2175864 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCTG 2175923 Query 32837 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | || |||||||| ||||||||| | ||||| || || || | || | Sbjct 2175924 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2175982 Query 32896 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 32955 | ||||| || | | | || || | || ||||| || | || || Sbjct 2175983 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2176042 Query 32956 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAA 33015 |||| || || ||||| || || || || || || |||||||||| |||||||| | Sbjct 2176043 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2176102 Query 33016 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 33075 |||| || || | ||||| || | | ||| ||||| || || ||||| ||| | Sbjct 2176103 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 2176162 Query 33076 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCC 33132 | || || || | | || || || |||| ||||||| || | | || |||| Sbjct 2176163 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 2176222 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | || | || ||| || || | ||| | || || ||||||| || || |||||||||| Sbjct 2176223 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 2176282 Query 33193 TTTTATACATATTCCAGAT 33211 | || ||||| | |||||| Sbjct 2176283 TCTTGTACATTTGCCAGAT 2176301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631952477600