Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 105 1e-17 seq2 98.7 2e-15 >seq3 Length=7792947 Score = 105 bits (116), Expect = 1e-17 Identities = 396/615 (64%), Gaps = 17/615 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||| ||||| ||| Sbjct 2175478 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTG 2175537 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| | ||| || || |||| || || || || || || || | Sbjct 2175538 GACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACGAATTCGATG 2175597 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||||| | || |||||| | |||||| | Sbjct 2175598 TACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGGAGAGCCTCAGTAAGA 2175657 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||| || | | ||| || || | ||| ||| ||| ||| | | | | Sbjct 2175658 AACTCCTGCTCAATAGAAACGGCATCGGTGATAATGTCCTGGATCATCTGTTTGCTGGCA 2175717 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | || || | |||| ||||| | |||| | ||| |||||||| || Sbjct 2175718 CGTC----CCTTGAGGTGAGAGTGGAGGAGACAGGCAAAGTCGGTGTGAAGACCCTCATC 2175773 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| |||| |||||| || | | ||| |||||||| | ||||| ||| ||||||| Sbjct 2175774 ACGAGAAATGAGCTCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCA 2175833 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | ||||| || ||| | | |||||| || | | |||||||| Sbjct 2175834 GAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAG 2175893 Query 251979 GCGCTCAGCAAACG------ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||| ||| || | ||| ||||| || | | || ||||| | ||||| Sbjct 2175894 ACGCTGAGCGAAGGTAGAGTTCTTATCCTG-GA-TCCATCGGATG-GCCCAATCCGCCTT 2175950 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | || || || || | || | ||||| | | |||| |||| ||| Sbjct 2175951 CTTTCGGATGCAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACGCTGGGCAGGGTC 2176010 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| | ||| | ||||| ||||| | || || |||||| || | | || Sbjct 2176011 CTTGATGTAGGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGAT 2176070 Query 252153 CTGGTAAGCATAGAA 252167 |||| || ||||||| Sbjct 2176071 CTGGAAACCATAGAA 2176085 Score = 84.2 bits (92), Expect = 4e-11 Identities = 230/350 (66%), Gaps = 3/350 (1%) Strand=Plus/Minus Query 294089 CCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAG 294148 |||| ||||| ||| ||||| ||| || | || |||| | || || |||| Sbjct 1387099 CCTTACCCTCTCTCTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAG 1387040 Query 294149 ACAGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCT 294208 ||||||||||| |||| |||| | |||| ||| | | | | |||| || |||| Sbjct 1387039 CAAGGCCAGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCT 1386980 Query 294209 TCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCT 294268 ||||||| |||||| || ||| | || | |||| || || ||||| | ||||| Sbjct 1386979 TCATGAAAAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCT 1386920 Query 294269 CACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGAT 294328 ||| ||||| ||||| ||||| || | || ||||| || ||||| || | Sbjct 1386919 TACCGTGATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGT 1386860 Query 294329 ACACAGCAAAGG-ACCCCTT--CCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGT 294385 | | || |||| ||| | | || || ||||||| |||| || ||| ||| Sbjct 1386859 AGATGGCGAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGT 1386800 Query 294386 CAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCG 294435 ||||| |||||| || ||||| || | ||| ||||||||| ||| Sbjct 1386799 TGAACACACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCG 1386750 >seq2 Length=8997558 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || |||||||| || |||||||||||||||||||| | | || || || || | Sbjct 1737540 AGTTGGATCTCTGTCTGGAGGTTGGAAGATGAAGCTGGCTTTGGCCCGTGCTATGCTGCA 1737599 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 ||| || |||||||| || ||||| || || || ||||| | ||| ||||| | || Sbjct 1737600 GCGCGCTGATGTCCTTCTTCTTGACGAACCTACTAACCATCTTGACGTTGCCAACATTGC 1737659 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | | || | || ||||| |||||| Sbjct 1737660 ATGGCTCGAGAACTACCT--CAAGTCTCACCCCGACATTACCAGTCTTATTGTTTCTCAC 1737717 Query 279873 GACTCTGGCTTC 279884 |||||||||||| Sbjct 1737718 GACTCTGGCTTC 1737729 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 7209559 GGTGAGGATCTTTGCAACTGTACATTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 7209618 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| |||||||| || | Sbjct 7209619 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGTGGTCCCAACGGTTCC 7209678 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 7209679 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 7209737 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 ||||| | ||| || | || ||||||||| | |||||| || Sbjct 7209738 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACTTGGACTCCGCT 7209783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836720985046