Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 307 2e-78 >seq3 Length=7792947 Score = 307 bits (340), Expect = 2e-78 Identities = 592/862 (69%), Gaps = 32/862 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| || |||||||| || || Sbjct 2176301 ATCTGGCAAATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGCTGAGGAGATCGATCTC 2176242 Query 42360 GCCAAGGACACGGCCGGCTGG-------GAGTCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 ||||||| || |||| || | ||| | ||| ||| | | ||| | Sbjct 2176241 TCCAAGGATCTCCACGACTGGAACAACCGATTGACT---TCAGA-CGAGCAATACTTCAT 2176186 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 | |||| || || |||||||| ||||| |||||||| ||||||||||| || | Sbjct 2176185 CTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATCGTCAATGAGAATCTTGTTGA 2176126 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 | |||| ||||| ||| | ||||| || |||||||| || |||||||| Sbjct 2176125 GCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTATGGTTTCCAGATCAT 2176066 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | ||||| || ||| || || || | || |||||| ||| || Sbjct 2176065 GATGGAGAACATCCACTCCGAAACATACTCCCTCCTCATCGATACCTACATCAAGGACCC 2176006 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||||| || ||||| ||| | || || || || |||||| |||||||| Sbjct 2176005 TGCCCAGCGTACATACCTCTTCAACGCCGTTGACACTATTCCTTGCATCCGAAAGAAGGC 2175946 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 ||| ||||| || |||||| || | || | || |||| || | || || || Sbjct 2175945 GGATTGGGCCATCCGATGGATCCAGGATAAGAACTCTACCTTCGCTCAGCGTCTTGTTGC 2175886 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| | ||||| ||||| ||||||||| || ||||| || ||||||||||||||||| Sbjct 2175885 TTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTCTGGCTCAA 2175826 Query 42773 GCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || || || ||||| || || | ||| || ||||| ||||| | || |||| Sbjct 2175825 GAAGCGTGGCCTC-ATGCCTGGTCTGAGCTTTTCTAACGAGCTCATTTCTCGTGATGAGG 2175767 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCG 42890 | || || | ||||||||||| ||||| ||| |||||| ||| || ||| | Sbjct 2175766 GTCTTCACACCGACTTTGCCTGTCTCCTCCACTC---TCACCTCAAGGGACGTGCCAGC- 2175711 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 || || | ||| || ||| ||||| || ||||| || ||| ||||||| || || Sbjct 2175710 AAACAGATGATCCAGGACATTATCACCGATGCCGTTTCTATTGAGCAGGAGTTTCTTACT 2175651 Query 42951 CAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| ||| ||||| ||||||||||| | |||||||| |||||||| | Sbjct 2175650 GAGGCTCT-CCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATCGA 2175592 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACAC 43063 | |||||| || | |||||| | | |||| || || | ||||| | Sbjct 2175591 ATTCGTCGCTGATCGTCTCCT------CGTTGCTCTCGGCAACGAGAAGGTGTACAAGTC 2175538 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | ||| |||||||| |||||||||||||| | | |||||||||||||| ||||| Sbjct 2175537 CACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGA 2175478 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 ||||||||| || ||||||||| Sbjct 2175477 GAAGCGCGTTGCTGACTACCAG 2175456 Score = 291 bits (322), Expect = 2e-73 Identities = 887/1362 (65%), Gaps = 49/1362 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || ||||| ||||||| |||| | || || Sbjct 1387878 GTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGG 1387819 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || || ||||||| || ||||||| || || || || ||||| || | || Sbjct 1387818 CTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATAGGAGCAAC 1387759 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||||||||||| | | ||||| ||| || || ||| | ||||||||| Sbjct 1387758 GAGCAGACTGTTGCGGATACCGTGAGTCTTGACATCCTCTCGGAGGGGTTCCCAGTCCCA 1387699 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | | ||||| | | | || ||||||||| ||||| || | |||| Sbjct 1387698 AAGGTC--AGAGGGCTTGACATT-------CCACATGTCGAACTGGAGAATACCCTCAGA 1387648 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCT 244388 | | ||| ||||| | |||| | ||||||||| || || ||| || | |||| | Sbjct 1387647 GGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGGCGAGTTGCACAGACGT 1387588 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 || ||||| |||| |||||||||||||||||| |||||||| || || |||| Sbjct 1387587 AGTA-AGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGAGCCT--- 1387532 Query 244449 CGCAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 |||| || |||| |||| | | ||| | || || || || ||||| || Sbjct 1387531 --CAGGAGACTCAAAGGGCATGCGGAGGGCAAGAAAGGCATCAGCGAGACCTTGCACACC 1387474 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 | || ||||||| ||| ||| ||||| | || || | || ||||| ||| Sbjct 1387473 AAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTTGGACAGGGTAGTGGTT 1387414 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623 | ||||||| | |||||| | |||||| | | | ||| ||| |||| || Sbjct 1387413 GACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTCGTGCAGCTTCTT 1387354 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||||||| | | | ||| || || || | | ||| | || | | Sbjct 1387353 GAAGTCGTA---GCAAGCATCTTC----ATAGT-----TGATAAAAGAGGGCAGAGACAA 1387306 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 | ||| |||||||| || || ||||| || | | | ||| | | ||||| ||||| Sbjct 1387305 GGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCA 1387246 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 ||||| || |||||| || |||| || || || |||| |||||| || Sbjct 1387245 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 1387186 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||||||| || |||||||| |||||| | || | | || ||| || Sbjct 1387185 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 1387126 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||||| | | ||||| |||| |||||| |||||| |||||| || Sbjct 1387125 TTTCTGAGCCTTGATAGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGC 1387066 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||| || ||| || || || | ||||| ||||| |||||||||||| | Sbjct 1387065 CTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGT 1387006 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| |||||| || ||| | || |||||| || || |||||||| || || ||| Sbjct 1387005 CCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTAAGAA 1386946 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAA 245102 ||||| | | | ||| ||| || ||| ||||| | || || | || || | Sbjct 1386945 CAGGTCACGAGCGCGGACCTCCTCCTTACC-GTGATTCTTTCGGAGATCAAGGAACTCGA 1386887 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 |||||||| ||||||| || || | ||||| |||| ||| || || |||||||| || | Sbjct 1386886 AGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACCAC 1386827 Query 245163 CCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 |||||| || | | ||||| |||||| | ||||| | || || || ||| Sbjct 1386826 CCTGGT----CAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCG 1386771 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATG 245275 || || || ||||| || |||||| | ||| || | | || ||| | | | Sbjct 1386770 TTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTT- 1386712 Query 245276 GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCT 245335 || ||| | || || || |||||| || | ||| || |||||| ||| || Sbjct 1386711 --CAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAG 1386654 Query 245336 ATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG 245395 || || || ||||||||| |||||| | | || ||||| || || ||||| |||| Sbjct 1386653 ATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGT 1386594 Query 245396 GGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 || | | | |||||| | ||||||||| || || || ||| Sbjct 1386593 GGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAG 1386552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339129174560