Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 120 7e-22 seq2 113 1e-19 >seq3 Length=7792947 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178 ||||| || ||| ||| |||| ||| | || |||| ||||| || | |||||||| Sbjct 2175662 GAGTTTCTTACTGAGGCTCTCCCTTGTGCCCTGCTCGGCATGAACTCCAACCTCATGAAG 2175603 Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238 || || ||||||||||| ||||||||| || || || ||||| | ||||| |||||| Sbjct 2175602 CAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTTGCTCTCGGCAACGAGAAGGTGTAC 2175543 Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298 || || | || || |||| ||| ||||| || || || | || ||||| |||||| Sbjct 2175542 AAGTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTC 2175483 Query 269299 TTCGAAAAGCGTGT 269312 ||||| ||||| || Sbjct 2175482 TTCGAGAAGCGCGT 2175469 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | |||| ||| || || ||||| || |||||| Sbjct 6169722 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 6169781 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || ||||| || ||| Sbjct 6169782 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 6169841 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || || | ||| || || || Sbjct 6169842 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 6169901 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || |||||||||||||| || || ||||||||||| |||||||| ||| Sbjct 6169902 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATG 6169952 >seq2 Length=8997558 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | || || || ||||| || ||||||| | Sbjct 2572983 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 2573042 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||| |||| ||||| ||| | ||| Sbjct 2573043 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 2573102 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | ||||| || || || | ||| || || || Sbjct 2573103 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATGACTCGACC 2573162 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 2573163 TCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2573209 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || |||| ||| ||||| || || || | || || || ||||| Sbjct 2573247 TCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAA 2573306 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| ||| | ||||| || || || ||||| || || | || ||||| Sbjct 2573307 ATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 2573366 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || || || ||||| || || ||||| ||||||| ||||||||| Sbjct 2573367 TCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACG 2573426 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2573427 AAGATCTGCAT 2573437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654309314068