Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 105 1e-17 seq2 95.1 3e-14 >seq3 Length=7792947 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 ||||||||||| | |||||| ||||||||||||||||| || || || | || | Sbjct 2175626 GGCATGAACTCCAACCTCATGAAGCAGTACATCGAATTCGTCGCTGATCGTCTCCTCGTT 2175567 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 || || || | ||||| |||||||| |||| ||||| || | ||| |||||| ||| Sbjct 2175566 GCTCTCGGCAACGAGAAGGTGTACAAGTCCACCAACCCTTTCGACTTCATGGAGAACATC 2175507 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || ||| || || || ||||||||||| ||||| || Sbjct 2175506 TCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGCGT 2175469 >seq2 Length=8997558 Score = 95.1 bits (104), Expect = 3e-14 Identities = 171/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||||||| | | ||| | || ||| | ||| | ||||| || ||| | |||| | Sbjct 7209808 AGTCAATGGTGGTCATCTCAGTATCAGCGGAGTCCAAGTCGTGCTCGACGAAGACAGTCT 7209749 Query 334165 TCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAG 334224 | | | ||| |||||| || || | ||| |||| || |||||||| || | Sbjct 7209748 TGACCTCGTCCTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGGG 7209689 Query 334225 TTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGA 334284 | || || || | ||||| || ||||| |||||||| || | |||||||| ||| || Sbjct 7209688 TGGACTTTCCGGAACCGTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGGA 7209629 Query 334285 ACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACA 334344 | || | ||| |||||||| || |||| || || ||||| ||| ||| | || | Sbjct 7209628 GGTGAGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAATGTACAGTTGCAAA 7209569 Query 334345 GATCCTCACC 334354 |||||||||| Sbjct 7209568 GATCCTCACC 7209559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879915216100