Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq3 118 1e-21 seq1 118 1e-21 >seq2 Length=8997558 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||||||| | ||||| ||| || ||||| || || Sbjct 2573241 GTCGACTCCTTCTGAATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 2573300 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||||||||| ||||| ||||||||||||||| || || |||| Sbjct 2573301 GCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 2573360 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| || || | ||| || |||| ||| | || |||||||||| || Sbjct 2573361 ACGTTG-TCGATAGTATCAGATGACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGT 2573419 Query 127096 TTTTACAAAAATCTGCATGG 127115 || || || |||||||||| Sbjct 2573420 CTTGACGAAGATCTGCATGG 2573439 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || || Sbjct 2573013 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 2573072 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||||||||||||||| ||||| ||||||||||||||| ||| || ||| Sbjct 2573073 GCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC 2573132 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| |||| ||| | || ||||| || || || Sbjct 2573133 ACATTGTCGATGGTGTCGGATGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTC 2573192 Query 127097 TTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 2573193 TTGACGAAGATTTGCAT 2573209 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | |||| || | || || || || || || ||||| Sbjct 2572695 TACTG-TCCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTA 2572753 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| | || ||| || || ||||| || || ||| | ||||||||||||||||| Sbjct 2572754 GTCGGAGAGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATC 2572813 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| || |||||||||||| ||| || ||||| |||| |||| ||||| | Sbjct 2572814 AGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGGATG 2572872 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 |||||| || | ||| | || |||||||||| Sbjct 2572873 ACTCGACCTCAAGGGTGATGGTCTTGCCGGTCA 2572905 >seq3 Length=7792947 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| |||| | Sbjct 6169722 CCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 6169781 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||||||||| || || || Sbjct 6169782 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 6169841 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| || | |||||| | | ||| || Sbjct 6169842 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAAGACTCCAC 6169900 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||| || || || || || || || |||||||||||| Sbjct 6169901 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 6169949 >seq1 Length=11760891 Score = 118 bits (130), Expect = 1e-21 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || ||| ||||||||||||||||||| || || ||||||||||| Sbjct 6455742 ATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGATCCGGGGGGATGCCCTCCTT 6455683 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| | |||||| |||| ||| | Sbjct 6455682 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGAT 6455623 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || ||||| ||||| || || || ||| ||| ||||| Sbjct 6455622 GGTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 6455586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500764337440