Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-16
>seq1
Length=11760891
Score = 104 bits (114), Expect = 2e-16
Identities = 299/458 (65%), Gaps = 8/458 (2%)
Strand=Plus/Plus
Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910
||||||| || ||||| | ||| || | ||||| | || |||| |||||||| || |
Sbjct 2730897 AATCAATACCCTCGAAGAGAGAGTCGATCTCAATGGAGGTCTGAGCGGAAGAAGAGAGAG 2730956
Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA--TTGATT 517968
|| || || || ||||| || || | || | ||| | || | || ||| |
Sbjct 2730957 TTCGCTTGGCGCGCTCACAAGCGGTTCGGAGACGTCGAAGAGCA----CGGACGTTGGTG 2731012
Query 517969 C--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 518026
| | ||| | |||| |||| |||||| || | ||| | | || || || ||
Sbjct 2731013 CTTAGATCCTTCTTATGCTTTCGCTTGAACTCGTTAACGAAGTGGTTAACGAGGCGGTTG 2731072
Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086
|| ||||||||||| ||||| | ||| | || | |||| | || | ||| | ||
Sbjct 2731073 TCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCC 2731132
Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146
|| |||| | | |||| ||||| ||| |||||||| | ||| || || || ||
Sbjct 2731133 TCCTCAATGGTAAGGAGAGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 2731192
Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206
|| || || || || |||||||| || |||| || ||||| || || ||
Sbjct 2731193 TTGCGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCG 2731252
Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266
|| || |||| | ||| || ||||| || || || ||||| || || || || |
Sbjct 2731253 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCCGCATCCTTGGTAGCCTGACGC 2731312
Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304
|| || ||||| || || ||||| || || | ||||||
Sbjct 2731313 TGAGAGTCGTTGAAGTAGGCAGGGACGGTGACAACGGC 2731350
Score = 104 bits (114), Expect = 2e-16
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914
||||| ||||||||| | |||| || |||||||| || ||||||||| | |||||||||
Sbjct 3003645 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 3003704
Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974
|| || |||||| |||| |||| || | ||| |||| || ||||| |||| || ||
Sbjct 3003705 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCATGAGGTCGGTGTGCCTCGTAGCATC 3003764
Query 668975 GCTAAAAATCTTACTTTTGACGAAATTGTAAC 669006
|| || ||||||| | ||| | ||| ||
Sbjct 3003765 GCCCGAACCCTTACTTATCCCGAGACTGTCAC 3003796
Score = 89.7 bits (98), Expect = 4e-12
Identities = 242/368 (66%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
||||| |||||||| | ||| || ||||| ||||| || || || || | |||||||
Sbjct 2730317 ATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAACACCACGGGGAGCAGGG 2730376
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
||||| || | | || | |||| || || || || ||| | || |||
Sbjct 2730377 GGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTGGTGCGCTGGCGCTCA 2730436
Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453
|||||| | | |||||| || ||| || || || || | || | || || |
Sbjct 2730437 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 2730496
Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
|| || || ||||| || ||||| | || | |||||||| |||||||| ||
Sbjct 2730497 GACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGCG 2730556
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571
|| || | ||| ||||| || || | ||| || | || | ||| | || | | ||
Sbjct 2730557 GTCTCGATACCGAGAGAGAGGGGGGCGACGTCGAGGAGCAGAATCTCGTTGGTGGCCTTG 2730616
Query 517572 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630
| || | | |||| |||||||| || || | ||| ||||| || |||||||| |||
Sbjct 2730617 CTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 2730676
Query 517631 TCAGGATT 517638
||||||||
Sbjct 2730677 TCAGGATT 2730684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780822102260236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |