Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-16 >seq1 Length=11760891 Score = 104 bits (114), Expect = 2e-16 Identities = 299/458 (65%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 ||||||| || ||||| | ||| || | ||||| | || |||| |||||||| || | Sbjct 2730897 AATCAATACCCTCGAAGAGAGAGTCGATCTCAATGGAGGTCTGAGCGGAAGAAGAGAGAG 2730956 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA--TTGATT 517968 || || || || ||||| || || | || | ||| | || | || ||| | Sbjct 2730957 TTCGCTTGGCGCGCTCACAAGCGGTTCGGAGACGTCGAAGAGCA----CGGACGTTGGTG 2731012 Query 517969 C--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 518026 | | ||| | |||| |||| |||||| || | ||| | | || || || || Sbjct 2731013 CTTAGATCCTTCTTATGCTTTCGCTTGAACTCGTTAACGAAGTGGTTAACGAGGCGGTTG 2731072 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 || ||||||||||| ||||| | ||| | || | |||| | || | ||| | || Sbjct 2731073 TCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCC 2731132 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || |||| | | |||| ||||| ||| |||||||| | ||| || || || || Sbjct 2731133 TCCTCAATGGTAAGGAGAGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 2731192 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 || || || || || |||||||| || |||| || ||||| || || || Sbjct 2731193 TTGCGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCG 2731252 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 || || |||| | ||| || ||||| || || || ||||| || || || || | Sbjct 2731253 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCCGCATCCTTGGTAGCCTGACGC 2731312 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || || ||||| || || ||||| || || | |||||| Sbjct 2731313 TGAGAGTCGTTGAAGTAGGCAGGGACGGTGACAACGGC 2731350 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||| ||||||||| | |||| || |||||||| || ||||||||| | ||||||||| Sbjct 3003645 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 3003704 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974 || || |||||| |||| |||| || | ||| |||| || ||||| |||| || || Sbjct 3003705 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCATGAGGTCGGTGTGCCTCGTAGCATC 3003764 Query 668975 GCTAAAAATCTTACTTTTGACGAAATTGTAAC 669006 || || ||||||| | ||| | ||| || Sbjct 3003765 GCCCGAACCCTTACTTATCCCGAGACTGTCAC 3003796 Score = 89.7 bits (98), Expect = 4e-12 Identities = 242/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||| |||||||| | ||| || ||||| ||||| || || || || | ||||||| Sbjct 2730317 ATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAACACCACGGGGAGCAGGG 2730376 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | || | |||| || || || || ||| | || ||| Sbjct 2730377 GGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTGGTGCGCTGGCGCTCA 2730436 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||| | | |||||| || ||| || || || || | || | || || | Sbjct 2730437 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 2730496 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || ||||| || ||||| | || | |||||||| |||||||| || Sbjct 2730497 GACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGCG 2730556 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | ||| ||||| || || | ||| || | || | ||| | || | | || Sbjct 2730557 GTCTCGATACCGAGAGAGAGGGGGGCGACGTCGAGGAGCAGAATCTCGTTGGTGGCCTTG 2730616 Query 517572 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | || | | |||| |||||||| || || | ||| ||||| || |||||||| ||| Sbjct 2730617 CTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 2730676 Query 517631 TCAGGATT 517638 |||||||| Sbjct 2730677 TCAGGATT 2730684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780822102260236