Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1 343 2e-89 seq4 98.7 1e-15 seq3 91.5 2e-13 >seq1 Length=11760891 Score = 343 bits (380), Expect = 2e-89 Identities = 993/1528 (65%), Gaps = 25/1528 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || ||||| | || ||| || || || || || || Sbjct 2730182 TCATCCTCCTCCTTGTACTTCTCAGCATCGTTGAGCATGCGCTCGATCTCCTCCTTGGAC 2730241 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || ||||| | ||| || || | |||| || | Sbjct 2730242 AGGCGGCCCTTGTCGTTGGTGATGACGATCTTGTTGGACTTGCCGGTACCCTTCTCGACG 2730301 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || ||||| | |||||| | || | ||| || || | Sbjct 2730302 GCGGAAACGTTCATGATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAACA 2730361 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | || ||||| || | || || | || | | |||| ||| | Sbjct 2730362 CCACGGGGAGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTG 2730421 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || ||||| || ||||| | || || |||| || || || Sbjct 2730422 GTGCGCTGGCGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAG 2730481 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | ||||| || || || | || || | | |||| Sbjct 2730482 GTAGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTC 2730541 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| || |||| || ||||| || || | ||||| | ||| | | Sbjct 2730542 ATCATACCACCAGCGGTCTCGATACCGAGAGAGAGGGGGGCGACGTCGAGGAGCAGAA-- 2730599 Query 6989 TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACCG 7037 ||| | || || |||| |||| | | || || || ||||| | Sbjct 2730600 TCTCG------TTGGTGGCCTTGCTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACAG 2730653 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || |||||||| || || || | || || | || || ||||| | Sbjct 2730654 CGGCACCGTAGGCAACAGCCTCATCAGGATTGATGGACTTGTTGGGCTCCTTTCCGTTGA 2730713 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | || || | | | | || | ||||| || || ||||||||||| | |||| Sbjct 2730714 AGTAGTCGGTGATGAGCTTCTGGACACGGGGGATACGGGTAGATCCACCGACGAGGACGA 2730773 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 | || | || || || |||||||| | ||| ||| ||||| || | | Sbjct 2730774 TCTCGTGGACGAGGGACTTGTCGATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGA 2730833 Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277 | ||||| | ||| || || ||||| ||||| |||||||| ||||| || | Sbjct 2730834 TGGTGGATCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGCACGGGTGATGGAAGTGT 2730893 Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337 ||||||||| || ||| | | || || || ||||||| || || || | ||||| | Sbjct 2730894 AGAAATCAATACCCTCGAAGAGAGAGTCGATCTCAATGGAGGTCTGAGCGGAAGAAGAGA 2730953 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 |||||||| ||||||||||| || ||||| | ||| ||||| ||||| ||| | Sbjct 2730954 GAGTTCGCTTGGCGCGCTCACAAGCGGTTCGGAGACGTCGAAGAGCACGGACGTTGGTGC 2731013 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 | ||| |||||||| || || || ||||| | | |||||| || ||| | | Sbjct 2731014 TTAGATCCTTCTTATGCTTTCGCTTGAACTCGTTAACGAAGTGGTTAACGAGGCGGTTGT 2731073 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||||||||||||||||||||| || || || || || | ||||| || |||||||| Sbjct 2731074 CGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCT 2731133 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | |||||| | | | || ||||| || ||||||||||| || || || ||||| |||| Sbjct 2731134 CCTCAATGGTAAGGAGAGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGT 2731193 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | || | || ||||| || |||||||| || || || || || || || || | Sbjct 2731194 TGCGCTCACCCTCAACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGT 2731253 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || || || ||| ||| || || || || ||||||| || || || || || | Sbjct 2731254 TGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCCGCATCCTTGGTAGCCTGACGCT 2731313 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || ||||| |||||||| ||||| || || || |||| |||| ||| |||||| | Sbjct 2731314 GAGAGTCGTTGAAGTAGGCAGGGACGGTGACAACGGCGTTGTTGACAGTCTCACCGAGGT 2731373 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | || || || | || ||| ||||| || | ||| | || ||||| || | | | Sbjct 2731374 AAGACTCAGCAGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTGA 2731433 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 | ||| | ||||| || || ||||| || || ||| || |||| | || Sbjct 2731434 AGGTCTTCTTCTCACCCTTGAACTCAACCTCGATGGCGGGCTT---GCCAGCCTTGTCGA 2731490 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 | | | | | | | ||||||||| | ||||||| || | ||||| | | Sbjct 2731491 TGATTGTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCAGCATCGGCGAACTTGCGGC 2731550 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 |||| | ||||| || || || || ||||| | |||||||||||| |||||||| | Sbjct 2731551 CGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTGG 2731610 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | || || || || ||||| || | || || || ||||| | || ||||| |||| Sbjct 2731611 CGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTTC 2731667 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTC 8085 | || || |||||||| || || || || Sbjct 2731668 GGTTACCCTGGTCGTTGGCGATGATATC 2731695 >seq4 Length=9395062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | ||| || || || ||||| || || || ||||| || Sbjct 6402556 ATCGAAATCCTCACCACCAAGGTGGGTGTCACCAGCGGTAGCGAGAACCTCGAAGATGCC 6402615 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | || |||||||| || ||||||||||| || || | || | Sbjct 6402616 ATCGTCAATGGAGAGCAGAGAAACATCGAAGGTACCACCACCGAGATCGTA---GACAAT 6402672 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | || ||| | | |||||| || |||||||| |||||||| || || || || | Sbjct 6402673 GATC-TGGCGCTCGCCATCGTTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTAGGCT 6402731 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | ||| || || ||| || || ||||| | | || || || || || |||| Sbjct 6402732 CGTTGACAATTCGGAGGACGTTGAGACCGGCAATGATACCGGCGTCCTTGGTGGCCTGTC 6402791 Query 7695 GTTG 7698 | || Sbjct 6402792 GCTG 6402795 >seq3 Length=7792947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 226/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||| | || ||||| || ||| | ||||| || || | ||| Sbjct 4481723 ATCGAAATCTTCACCACCGAGATGGGTATCACCGTTGGTGGACTTGACCTCGAAAACACC 4481664 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || | | | || | ||| || ||||||||||| || || | | || Sbjct 4481663 GTTCTGGATCTCAAGGATGGAGATATCGAAGGTACCACCACCAAGATCGTAGACAGCGAC 4481604 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | || | || ||| ||||||||||| || | ||| || || || || || Sbjct 4481603 AATGCTGTCAGCCTC------CTTCTCGAGACCGTAGGCAAGAGCGGCGGCAGTAGGCTC 4481550 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCT-TG 7692 || | | ||| || ||| ||||| ||||| ||| | || || || || ||| || Sbjct 4481549 GTTGACGACACGGAGGACGTTGAGGCCGGCAAT--TTGACCAGCGTCCTTGGT-GCTCTG 4481493 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||| || || ||||| |||||||| ||||| || ||||| |||| | ||| |||| Sbjct 4481492 TCGCTGAGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGATAGGCTTAGA 4481433 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 ||| |||| || ||| | || ||||| ||| | || || Sbjct 4481432 GAGGTACGCCTCGGCGGTCTCCTTCATCTTGTTGAGGAC 4481394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132752365040