Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 212 7e-50 seq4 163 3e-35 >seq3 Length=7792947 Score = 212 bits (234), Expect = 7e-50 Identities = 1009/1588 (64%), Gaps = 49/1588 (3%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 |||||||||||||| ||||| |||||| ||||| ||||| | | | | | | | Sbjct 1388084 GACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAA----CCTGTCG 1388029 Query 109567 CT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGAT 109622 || ||| ||||| ||||||||||||| | |||||| || | || |||| ||| Sbjct 1388028 CTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGAT 1387969 Query 109623 GTTTTGAATAGAGCC---ACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679 ||| || ||||| || | |||| | | || | | |||||| | | ||||| || Sbjct 1387968 GTTCTGGATAGAACCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAG 1387912 Query 109680 ACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739 ||| | | ||||| | | ||| |||||| || || || |||||||| Sbjct 1387911 ACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAG 1387852 Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799 || || |||||||||| | ||||| || || || || || |||||||| || || Sbjct 1387851 GACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAAT 1387792 Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859 || | || || || ||||| ||||| | ||| |||||||| |||| ||| | || Sbjct 1387791 CTGCGAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGT 1387732 Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919 ||| || ||| || | | ||||| || || | || | || ||| Sbjct 1387731 CTTGACATCCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAG------GGCTTGACATT 1387678 Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979 |||||| || || || | |||||||| ||||| || |||||||| | ||| | Sbjct 1387677 CCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGG 1387618 Query 109980 CCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036 || || ||| ||| | | | || | || || || || || || || ||||| Sbjct 1387617 ACCTTCCTCCTTGGCGAGTTGCACAGACGTAGTA---AGGGCAGCGTGGTAGATGGTCTC 1387561 Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAAT 110096 || || || |||| |||| ||| | | || ||||| | | || Sbjct 1387560 GAAGATTTGCTTGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAG 1387501 Query 110097 AAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCG 110156 ||| |||| || ||||| || ||||| ||||||||||| || || |||||| | Sbjct 1387500 AAAGGCATCAGCGAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTT 1387441 Query 110157 TCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCAC 110216 ||||| || || ||||| |||| |||||||| | || | ||| || Sbjct 1387440 ACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAAC 1387381 Query 110217 AGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACAT 110275 | | |||| || || || || | | | ||| | | | ||| | || |||| | Sbjct 1387380 AACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTA-GCAAGCATCTTCATAGTTGATAA 1387322 Query 110276 ATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATT 110335 | ||| |||| | || ||||| ||||| |||| ||| || | || ||||| Sbjct 1387321 AAGAGGGCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATT 1387262 Query 110336 CCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATT 110395 | | || || || |||| |||||| || ||| ||| | |||||| || || | Sbjct 1387261 CAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCT 1387202 Query 110396 TGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGA 110455 || ||||| |||||| ||||||||| | ||| | || || || ||||| | || | Sbjct 1387201 TGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAA 1387142 Query 110456 GAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTC 110513 ||||||| | ||| | | || || || ||||| | | ||| || ||| Sbjct 1387141 GAATGGCGTACCAAAGTTTCTGAGCCTTGATAGACTTGCG--ACCCTTACCCTCTCTCTC 1387084 Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573 |||||| ||||| |||||||||| | ||||| |||| ||| || || || Sbjct 1387083 GTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGG-GCATT 1387025 Query 110574 -GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAG 110632 || || || | ||| | ||| | || ||| || | ||||||||| || |||| Sbjct 1387024 CGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAG 1386965 Query 110633 GAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGC 110692 | ||||| | || |||| |||||||| || |||| || | ||| || || | Sbjct 1386964 GGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTC 1386905 Query 110693 GTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATC 110752 | || || | || || | || || | |||||||||||| || |||| |||| || | Sbjct 1386904 GGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCAC 1386845 Query 110753 CCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806 | | | || ||| |||||| ||| || || || ||| ||||| || | | Sbjct 1386844 C---AGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCA 1386788 Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866 |||| |||| || || | ||| |||||| ||||| || || | |||||| Sbjct 1386787 GCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCAC 1386728 Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCT 110925 | || |||| | || ||||||||||| ||| ||| ||| |||| | ||| Sbjct 1386727 GGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCT 1386668 Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAA 110985 |||| ||| | || ||||||||||| || |||| | ||| || ||||| || Sbjct 1386667 -TGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAT 1386609 Query 110986 GACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGA 111045 || | |||||| | || || || || ||||| | || || | |||||| ||| ||| Sbjct 1386608 GAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA--AGA 1386551 Query 111046 CCTTG--GGACATCTTGTTGTATGTGTC 111071 |||| ||||| ||||||||| || Sbjct 1386550 ACTTGCTTGACATGAGGTTGTATGTCTC 1386523 Score = 86.0 bits (94), Expect = 7e-12 Identities = 120/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| ||||| |||||||| ||| |||| || || Sbjct 2175747 GGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACC 2175806 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || | ||||| ||||| ||||||| | ||| || |||||||| Sbjct 2175807 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGAT 2175866 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG 119661 ||||| || || ||||| | ||||||| ||| ||||| ||| Sbjct 2175867 ACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGC-GAAGGTAGAG 2175912 >seq4 Length=9395062 Score = 163 bits (180), Expect = 3e-35 Identities = 321/464 (69%), Gaps = 22/464 (5%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || || || || | ||||| | || || ||||| | ||||| ||| | Sbjct 1338169 CGATCGAATCGTCCAGGTCGCATCAGAGCCTTGTCCAGCATATCCGCTCGGTTAGTACCA 1338228 Query 11563 GCAATGACTACAATGCCAGT-CTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 |||| ||| || | || || ||| | ||| ||| || |||||||| || |||| ||||| Sbjct 1338229 GCAAGGACGACCA--CCTGTTCTCGAGTGTTGAAGCCATCCATTTCCGTAAGAATCTGGT 1338286 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677 | | |||| |||||| || ||||| | | ||| | ||||| | ||| | | Sbjct 1338287 TCAGCGTCGCTTCACGTTCGTCGTTACCGCCAAAACC-CTTGCCGCTCTCTTGTCGCGCG 1338345 Query 11678 CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 |||| || |||||||| ||||| || | ||| || || ||| ||| ||| Sbjct 1338346 CGACCAATGGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCG 1338405 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791 |||| || || ||||||||| | ||||||||| || |||||||||||||| | | Sbjct 1338406 GCGAACAGATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAA 1338465 Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851 | || |||||||| |||||| || ||||||||| || |||| || || | | Sbjct 1338466 CCGC-TCACACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACG 1338523 Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---AC 11908 ||||||| ||||| || | ||||| | || || || || |||||||||||||| Sbjct 1338524 TCTTACCAGTACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCT 1338583 Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 || |||| | |||||||| ||| | |||| ||||| |||| Sbjct 1338584 TTTCAAACT---TCTCAGGCTGCTTCAAGAAGCTCACAAACTCC 1338624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975955826800