Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq3 212 7e-50
seq4 163 3e-35
>seq3
Length=7792947
Score = 212 bits (234), Expect = 7e-50
Identities = 1009/1588 (64%), Gaps = 49/1588 (3%)
Strand=Plus/Minus
Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566
|||||||||||||| ||||| |||||| ||||| ||||| | | | | | | |
Sbjct 1388084 GACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCACAA----CCTGTCG 1388029
Query 109567 CT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGAT 109622
|| ||| ||||| ||||||||||||| | |||||| || | || |||| |||
Sbjct 1388028 CTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGAT 1387969
Query 109623 GTTTTGAATAGAGCC---ACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAG 109679
||| || ||||| || | |||| | | || | | |||||| | | ||||| ||
Sbjct 1387968 GTTCTGGATAGAACCGTTATCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCAAAG 1387912
Query 109680 ACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739
||| | | ||||| | | ||| |||||| || || || ||||||||
Sbjct 1387911 ACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAG 1387852
Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799
|| || |||||||||| | ||||| || || || || || |||||||| || ||
Sbjct 1387851 GACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAAT 1387792
Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859
|| | || || || ||||| ||||| | ||| |||||||| |||| ||| | ||
Sbjct 1387791 CTGCGAGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGT 1387732
Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC 109919
||| || ||| || | | ||||| || || | || | || |||
Sbjct 1387731 CTTGACATCCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAG------GGCTTGACATT 1387678
Query 109920 CCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGA 109979
|||||| || || || | |||||||| ||||| || |||||||| | ||| |
Sbjct 1387677 CCACATGTCGAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGG 1387618
Query 109980 CCCCTCAACCTCGGCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036
|| || ||| ||| | | | || | || || || || || || || |||||
Sbjct 1387617 ACCTTCCTCCTTGGCGAGTTGCACAGACGTAGTA---AGGGCAGCGTGGTAGATGGTCTC 1387561
Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAAT 110096
|| || || |||| |||| ||| | | || ||||| | | ||
Sbjct 1387560 GAAGATTTGCTTGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAG 1387501
Query 110097 AAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCG 110156
||| |||| || ||||| || ||||| ||||||||||| || || |||||| |
Sbjct 1387500 AAAGGCATCAGCGAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTT 1387441
Query 110157 TCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCAC 110216
||||| || || ||||| |||| |||||||| | || | ||| ||
Sbjct 1387440 ACGAGCCTCTTGGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAAC 1387381
Query 110217 AGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACAT 110275
| | |||| || || || || | | | ||| | | | ||| | || |||| |
Sbjct 1387380 AACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTA-GCAAGCATCTTCATAGTTGATAA 1387322
Query 110276 ATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATT 110335
| ||| |||| | || ||||| ||||| |||| ||| || | || |||||
Sbjct 1387321 AAGAGGGCAGAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATT 1387262
Query 110336 CCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATT 110395
| | || || || |||| |||||| || ||| ||| | |||||| || || |
Sbjct 1387261 CAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCT 1387202
Query 110396 TGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGA 110455
|| ||||| |||||| ||||||||| | ||| | || || || ||||| | || |
Sbjct 1387201 TGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAA 1387142
Query 110456 GAATGGCCTTCCATACATCGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTC 110513
||||||| | ||| | | || || || ||||| | | ||| || |||
Sbjct 1387141 GAATGGCGTACCAAAGTTTCTGAGCCTTGATAGACTTGCG--ACCCTTACCCTCTCTCTC 1387084
Query 110514 GTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT 110573
|||||| ||||| |||||||||| | ||||| |||| ||| || || ||
Sbjct 1387083 GTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGG-GCATT 1387025
Query 110574 -GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAG 110632
|| || || | ||| | ||| | || ||| || | ||||||||| || ||||
Sbjct 1387024 CGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAG 1386965
Query 110633 GAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGC 110692
| ||||| | || |||| |||||||| || |||| || | ||| || || |
Sbjct 1386964 GGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTC 1386905
Query 110693 GTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATC 110752
| || || | || || | || || | |||||||||||| || |||| |||| || |
Sbjct 1386904 GGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCAC 1386845
Query 110753 CCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGA 110806
| | | || ||| |||||| ||| || || || ||| ||||| || | |
Sbjct 1386844 C---AGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCA 1386788
Query 110807 GCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCAC 110866
|||| |||| || || | ||| |||||| ||||| || || | ||||||
Sbjct 1386787 GCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCAC 1386728
Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCT 110925
| || |||| | || ||||||||||| ||| ||| ||| |||| | |||
Sbjct 1386727 GGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCT 1386668
Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAA 110985
|||| ||| | || ||||||||||| || |||| | ||| || ||||| ||
Sbjct 1386667 -TGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAT 1386609
Query 110986 GACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGA 111045
|| | |||||| | || || || || ||||| | || || | |||||| ||| |||
Sbjct 1386608 GAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA--AGA 1386551
Query 111046 CCTTG--GGACATCTTGTTGTATGTGTC 111071
|||| ||||| ||||||||| ||
Sbjct 1386550 ACTTGCTTGACATGAGGTTGTATGTCTC 1386523
Score = 86.0 bits (94), Expect = 7e-12
Identities = 120/167 (72%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||||| || ||||| ||||| |||||||| ||| |||| || ||
Sbjct 2175747 GGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACC 2175806
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| || | ||||| ||||| ||||||| | ||| || ||||||||
Sbjct 2175807 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGAT 2175866
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG 119661
||||| || || ||||| | ||||||| ||| ||||| |||
Sbjct 2175867 ACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGC-GAAGGTAGAG 2175912
>seq4
Length=9395062
Score = 163 bits (180), Expect = 3e-35
Identities = 321/464 (69%), Gaps = 22/464 (5%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|||||||| || || || || | ||||| | || || ||||| | ||||| ||| |
Sbjct 1338169 CGATCGAATCGTCCAGGTCGCATCAGAGCCTTGTCCAGCATATCCGCTCGGTTAGTACCA 1338228
Query 11563 GCAATGACTACAATGCCAGT-CTC-ATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620
|||| ||| || | || || ||| | ||| ||| || |||||||| || |||| |||||
Sbjct 1338229 GCAAGGACGACCA--CCTGTTCTCGAGTGTTGAAGCCATCCATTTCCGTAAGAATCTGGT 1338286
Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677
| | |||| |||||| || ||||| | | ||| | ||||| | ||| | |
Sbjct 1338287 TCAGCGTCGCTTCACGTTCGTCGTTACCGCCAAAACC-CTTGCCGCTCTCTTGTCGCGCG 1338345
Query 11678 CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733
|||| || |||||||| ||||| || | ||| || || ||| ||| |||
Sbjct 1338346 CGACCAATGGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCG 1338405
Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791
|||| || || ||||||||| | ||||||||| || |||||||||||||| | |
Sbjct 1338406 GCGAACAGATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAA 1338465
Query 11792 CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAG 11851
| || |||||||| |||||| || ||||||||| || |||| || || | |
Sbjct 1338466 CCGC-TCACACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACG 1338523
Query 11852 TCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---AC 11908
||||||| ||||| || | ||||| | || || || || ||||||||||||||
Sbjct 1338524 TCTTACCAGTACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCT 1338583
Query 11909 TTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952
|| |||| | |||||||| ||| | |||| ||||| ||||
Sbjct 1338584 TTTCAAACT---TCTCAGGCTGCTTCAAGAAGCTCACAAACTCC 1338624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975955826800
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