Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 324 3e-83 >seq3 Length=7792947 Score = 324 bits (358), Expect = 3e-83 Identities = 1160/1772 (65%), Gaps = 114/1772 (6%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| || || || ||||||||||| ||||| Sbjct 1388219 ACGGTGAACTGGATAGGGGCAGCAGCAGCCTGTGTACGGAGGTAGTACATGCCAGTCTTG 1388160 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| | |||||| |||| ||| |||| | | || Sbjct 1388159 AGACCGAGCTT---CCAGCCAGCGAAGTGCAT-GCTGGTGA---TCTTGCCCATGGTAG- 1388108 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | || || || | ||| || |||||| ||| || ||||| | | Sbjct 1388107 --GGTCCT--TCATG-------TGAATGTTGAGAGACTGAGACTGATCAATGAAGGCACC 1388059 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | |||||| ||||| | | | | || ||| || | ||||||||| |||||| | | Sbjct 1388058 ACGGTCAGCAGCCATCTGCACAACCTGTCGCTGAGAAATCTCCCACACAGTCTTGTACAG 1387999 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| || | |||| | |||||||||||| | ||| || || ||| ||| Sbjct 1387998 AGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTGGATAGAACC---GT-TAT---CAG 1387946 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | || ||||| Sbjct 1387945 CAATG-ATGCGGTTCTTCATAGCATCGGACCAAAGACCCATGTCGACAAGATCCTTGAGA 1387887 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| || || | || || | | ||||| | ||| || Sbjct 1387886 AGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTCGGCGTTGGTAGATGTTGGAG 1387827 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||| | || |||||||| || |||||||| | || ||||| || ||||| Sbjct 1387826 GTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAGGTACTGGCGGTAGGCATA 1387767 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTG---CTCGCCGATGAGGCGC-CGAAGCTC 213076 ||||| || || |||||||| | | ||||| || | | | | | || || Sbjct 1387766 GGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGAC----ATCCTCTCGGAGGGG 1387711 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||||||||| | |||| | ||| || ||||||||||| ||||| | Sbjct 1387710 TTCCCAGTCCCAAAGGTCAGAGGG---------CTTGACATTCCACATGTCGAACTGGAG 1387660 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 || || |||| | ||| ||||| | | | ||||||||| || | |||||||| Sbjct 1387659 AATACC----CTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTGG 1387604 Query 213193 CCAGCTCGCAG-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 | || | ||| |||| |||||||||| ||||||||| || || || | | |||| Sbjct 1387603 CGAGTT-GCACAGACGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTC 1387545 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| |||||||| | | | || ||||||| || Sbjct 1387544 AGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAGAAAGGCATCAGCGAGA 1387485 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 || || || || | || ||||||| ||| | || ||| || |||| ||| | | Sbjct 1387484 CCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGC-CTCTTGGAC 1387426 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| |||| ||||||||||||||| | |||||| | |||| ||||| | Sbjct 1387425 AGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGACCTC 1387366 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAG 213484 | ||| | || |||| |||||| | || | | ||| ||||| Sbjct 1387365 GTGCAGCTTCT------TGAAGTCGTAGCAAGCATCTTCATAGTTGATAAAAGAGGGCAG 1387312 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 | | | ||| ||||||||||| || ||||| | || | | ||| || |||||||| Sbjct 1387311 AGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTC 1387252 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTGG 213603 |||||||||||| || ||||||||| || ||||||| ||||| ||| ||||| | | Sbjct 1387251 AGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTT--ACTCTTGCGATTG 1387194 Query 213604 CAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGG 213662 ||| |||||||||||||||| | ||| ||||||||| ||||| | | || || | Sbjct 1387193 CAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCG 1387134 Query 213663 CTCCAGAGGTACCTGGCCTTGA-CCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACT 213720 ||| || | | ||||||| || || ||| | | | | | |||||||| Sbjct 1387133 TACCAAAGTTTCTGAGCCTTGATAGACTTGC--GACCCTTAC---CCTCTCTCTCGTACT 1387079 Query 213721 GTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATGC 213778 |||||| || | | ||||||| || || | || ||| | || |||| || | Sbjct 1387078 TTTCGTACAGAGCCTCAAATTCGTCACCGTAG---CAGT-CAG-CAAGGCCAGGGCATTC 1387024 Query 213779 G---GGACACATGAGGCTCCAGTCCCCGTCATCTCT-GACTCTCTGCATGAACAGGTCCG 213834 | || |||||||| |||| || |||| ||||| ||| | || |||||| || || | Sbjct 1387023 GTTAGGGCACATGAGAGTCCATTCGCCGT-TTCTCTCGACACGCTTCATGAAAAGATCAG 1386965 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC 213894 ||| ||| || || ||||||||| | | | ||| ||| || || || | Sbjct 1386964 GGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTC 1386905 Query 213895 GCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGC 213954 | ||||| || || || |||| ||| |||||||| || || | ||||||||| ||||| | Sbjct 1386904 GGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCAC 1386845 Query 213955 CCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGA 214011 | || | |||| || |||||||| || | || ||||||| | ||||| | Sbjct 1386844 CAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCA 1386785 Query 214012 CGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA 214071 ||| || | |||||||| || ||||| || || || || ||||| | ||| | | Sbjct 1386784 TGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGA 1386725 Query 214072 --GGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCT 214129 | || | | | || || || ||||| || |||||| |||||||| || | | Sbjct 1386724 TTCGGTGGGCGTTCA-AG-CCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTT 1386667 Query 214130 CACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAA-GAAGCAGCTCG 214188 | || || ||| || | |||||||| || | | ||| ||| |||||| | Sbjct 1386666 GAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCA-TATCAACAAGGAAGCATGATG 1386608 Query 214189 AGAGCTGGGGC-CTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAAC 214247 | ||||| ||| |||| | || | |||||| | |||||||| ||||| | | ||| Sbjct 1386607 AAAGCTGAGGCTGTGGA-GTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAAC 1386549 Query 214248 TTGTTAGAGAGGAGCCTGTAGGTCTCCAGGAC 214279 ||| | || | ||| |||| ||||||| ||| Sbjct 1386548 TTGCTTGACATGAGGTTGTATGTCTCCAAGAC 1386517 Score = 188 bits (208), Expect = 1e-42 Identities = 487/733 (66%), Gaps = 23/733 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 2175456 CTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 2175515 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||| ||||||| | || |||||| | || ||| | | || | Sbjct 2175516 CATGAAGTCGAAAGGGTTGGTGGACTTGTACACCT-TCTCGTTGCCGAGAGCAACGAGGA 2175574 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| | |||||||| | ||||||| || ||||||||| | |||| Sbjct 2175575 GACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGG 2175634 Query 48018 -ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||| | ||||| || |||||||||| ||| || ||||| || | ||| Sbjct 2175635 CACAAGGG-AGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATG 2175693 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| |||| || ||| || | ||| | | ||| | Sbjct 2175694 TCCT------GGATCATCTG----TTTGCTG-GCACGTCCCTTGAGGTGAGAGTGGAGGA 2175742 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 ||||||||||| |||| | || || || || |||||| |||| || |||| | Sbjct 2175743 GACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCA 2175802 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||||||||||| || | || ||||||||||| || | || || | || ||||| Sbjct 2175803 GACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGA 2175862 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || || || || || | || |||| | || |||||| || Sbjct 2175863 AGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAGTTCTTATCCT 2175922 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | ||||| || |||||||| |||||| || || || || | ||| Sbjct 2175923 GGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 2175982 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 |||||| | | | || | | |||| | |||||| || || | ||| Sbjct 2175983 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 2176042 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | || ||||| | ||||| || ||||||||| || |||||| | ||||| | Sbjct 2176043 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 2176102 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || | ||||| ||| | |||||||||||||| || || || || |||| Sbjct 2176103 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 2176162 Query 48549 CAAAGAAGGCAAG 48561 | ||||| ||||| Sbjct 2176163 CGAAGAAAGCAAG 2176175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532730135040