Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 170 6e-37 seq1 118 3e-21 >seq3 Length=7792947 Score = 170 bits (188), Expect = 6e-37 Identities = 263/370 (71%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| ||||| | ||||| |||||| || ||||| || |||| Sbjct 2176099 CCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATGGAGAACATCCACTCCGAAACAT 2176040 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423 | || || || ||||| |||||||| || | | |||| | ||| || | |||||| Sbjct 2176039 ACTCCCTCCTCATCGATACCTACATCAAGGACCCTGCCCAGC-GTACATACCTCTTCAAC 2175981 Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||| || | ||||||| || |||||| | || ||||| || |||||||||| Sbjct 2175980 GCCGTTGACACTATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAG 2175921 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 || ||| | | || ||| ||||| ||||||||||||| || ||||| || || Sbjct 2175920 GATAAGAACTCTACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTC 2175861 Query 133544 ttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || |||| | || || ||||| || |||||||| | | ||||| || Sbjct 2175860 TTCAGCGGTGCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCT 2175802 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTT 133662 | | ||||||||||| || ||||| | || |||| ||||||||||| |||||| | | Sbjct 2175801 GAGCTTTTCTAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTCT 2175742 Query 133663 ACTTCACTCT 133672 || |||||| Sbjct 2175741 CCTCCACTCT 2175732 Score = 123 bits (136), Expect = 7e-23 Identities = 544/853 (64%), Gaps = 11/853 (1%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| |||||| | |||||| ||||||||| || || |||||| || | ||||| | Sbjct 1387270 CGCAGTATTCAATGATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTT 1387211 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 ||||| || | || || ||||||||| || ||| | ||| |||| ||||| ||| Sbjct 1387210 GGTTACTCTTGCGATTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCT 1387151 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || ||||| ||| || | | || || || |||| | || | Sbjct 1387150 GGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGACTTGCGACCCTTACCCT 1387091 Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863 | ||| || |||| || | ||| | | || |||||||| || ||| || || Sbjct 1387090 CTCTCTCGTACTTTTCGTACAGAGCCTCAAAT--TCGTCACCGTAGCAGTCAGCAAGGCC 1387033 Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAA 155923 |||||| | | ||||| | || | ||| || | ||||||| ||| || Sbjct 1387032 AGGGCATTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAA 1386973 Query 155924 TACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTG 155983 | |||| ||||| ||| |||| ||||| | || |||||| | ||||| Sbjct 1386972 AAGATCAGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTG 1386913 Query 155984 ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGC 156043 |||||| || || || | ||| || | || | || ||| || || || || || Sbjct 1386912 ATTCTTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGC 1386853 Query 156044 AAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 || |||| | |||| |||||||| || || || |||||||| || ||||| || Sbjct 1386852 GAAGGCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACAC 1386793 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 || ||||| |||| ||||| |||||||| |||||||| ||| || | || |||| Sbjct 1386792 ACGCAGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT 1386733 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGC 156219 | || | || | | ||||||||||| | |||| || ||||| || | Sbjct 1386732 GGCACGGATTCGGTGGGCGTTCAAGCCAATACCACCAG-CCATCTTGGAAATCATGGCAC 1386674 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 | ||| | |||| | | ||||| ||||| || || | ||| | || ||| Sbjct 1386673 AAGTCTTGAGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 1386614 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | ||||| |||| || || |||||||||| || || |||||||| | | Sbjct 1386613 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 1386554 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCCGTGA 156398 | |||| | ||||| | |||||||||| | ||||| || |||| || Sbjct 1386553 AGAACTTGCTTGACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGA 1386494 Query 156399 ATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATT 156458 | || | || ||| | ||| ||||||||| || ||||| |||| || ||||| Sbjct 1386493 TTCCA-ACAGCGACTCGCATGATCATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATC 1386435 Query 156459 CGCAGAAGGTATG 156471 | || | ||||| Sbjct 1386434 TGTAGCAAGTATG 1386422 >seq1 Length=11760891 Score = 118 bits (130), Expect = 3e-21 Identities = 382/587 (65%), Gaps = 12/587 (2%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| |||| || Sbjct 8560559 ATGAGTCCACAAATTTCGCAAACGTGGACTCGGAAAGCATCCGACACCTCAAATAGACGC 8560500 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| || |||||||| | |||||| |||||||||||||| || ||||| Sbjct 8560499 TCCTTCAGGAAGGCAGCAGCACCGTGAGCAATCATGCAATCACGCTCCATCTCTCCGAAT 8560440 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || || |||||||| || || | ||||||| ||||||| || || | | | | ||| Sbjct 8560439 CGCAGGCCACCATCTCGGGCACGACCCTCGACAGGCTGCCGGGTCATAATCTGAACGGGA 8560380 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || || || || ||| |||| ||||| || ||||| |||||| ||| Sbjct 8560379 CCACGGGCACGAGCGTGGATCTTGTCATCCACCATGTGACGAAGACGTTGGTAGTATGTA 8560320 Query 251647 GGACCGATGAAGATGCTCGA--AGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTT 251704 || |||| ||||| || || | | | | ||| || || | || ||||| || | Sbjct 8560319 GGTCCGAAGAAGA--CTTGAGCACGGAGCTTACGTCCGGTGTGACCATTGTACATGACCT 8560262 Query 251705 CGTTTCCATTAGATTCATAACCAAGTT---TCTGTAGCTCTGAAGCAATATCACCAATCT 251761 | || ||||| ||||| ||| || | | ||||| | | | | Sbjct 8560261 CAAAACCTCGAGATTGGTAACCGTGTTTTCTCAGAATATCTGACACGGAGT---CGACGG 8560205 Query 251762 TGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTA 251821 ||| | | || || |||| || | | |||| | | | || || | | Sbjct 8560204 TGACATCAGTGAATGGCGTTGCGTCACCCTCCATACCCTCCAGTGTTGAGACCTTACTCA 8560145 Query 251822 AAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGA 251881 |||| ||| ||| ||||| || ||||||||| |||||||| || || ||||||| Sbjct 8560144 AAAGACACTCAATCAAATGGGCAATTGTCATACGAGACGGAATAGCGTGAGGGTTGATGA 8560085 Query 251882 TGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTT 251940 | ||||| || |||| || || |||| |||||||||| | || ||| | Sbjct 8560084 TAATGTCAGGAGTCAGACCCTCTCTGCTGAAAGGCATATCCTCCT-GTCGATAGGTAACA 8560026 Query 251941 CCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || || || |||||||| ||||||||||| |||||| |||||||| Sbjct 8560025 CCGATTGTACCCTTTTGACCGTGACGAGAGGCGAACTTGTCACCAAT 8559979 Score = 116 bits (128), Expect = 1e-20 Identities = 204/297 (69%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 302568 AATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTAC 302627 || |||||| | | ||||| || || |||||||| ||||||||| || || || || Sbjct 3005198 AAGGTCTTCAAGAGCCTTGACCAATCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGAC 3005139 Query 302628 AGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCG 302687 || |||||||| ||||| | |||||| |||| || |||||||| | ||| || Sbjct 3005138 CGCAGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGT 3005079 Query 302688 TAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTT 302747 || || | | | ||| |||| ||||||||||| || ||||| |||| || ||| Sbjct 3005078 AAGACCACGTAGGTAAGAGTTCTCGACGAAACCACGGGCTTCGGGAGAATAATCATCCTT 3005019 Query 302748 GGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 ||| || || ||||| || | | || | || | || || |||||||| || ||| | Sbjct 3005018 GGTGAAATGAGGCAGAGTACGATACTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGAT 3004959 Query 302808 CTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || || || | || | |||| |||||||| || | | | |||||||| || Sbjct 3004958 TTGTTGACCGACAAGCGCAGTCATTTGCGAAATGTTGATAGAAGAACCCTTGGAACC 3004902 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||||| | ||| || ||||| |||| ||||| |||||| | |||||||| Sbjct 3005971 AGAATTTCTTTGAGACGAGGCACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 3005915 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||| | ||||||||||| || || || | Sbjct 3005914 AAATGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAA 3005855 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 3005854 ACACCAACCATTTCACCAGG 3005835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817486854022