Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq4 120 4e-21
seq3 113 6e-19
seq1 104 3e-16
>seq4
Length=9395062
Score = 120 bits (132), Expect = 4e-21
Identities = 87/101 (86%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251
||||||||||| |||||||| || ||||| |||| |||||| | || ||||||||||||
Sbjct 1698085 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 1698026
Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||| | |||||||| |||||||||||||| || ||
Sbjct 1698025 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 1697985
>seq3
Length=7792947
Score = 113 bits (124), Expect = 6e-19
Identities = 205/300 (68%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| || || || |||||||| |||| ||||||||
Sbjct 1386825 CTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTTGGA 1386766
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| ||||| || || | ||| | ||| | ||| || | ||| ||| |||||
Sbjct 1386765 AGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCAAGCC 1386706
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| |||||| || | || || ||||| || |||||||| || ||
Sbjct 1386705 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCATC 1386646
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| ||||||| || || || ||||| || || || || || | || ||
Sbjct 1386645 AATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGAGTACC 1386586
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| | ||||| | || ||||| |||| | |||||| || ||| ||
Sbjct 1386585 GGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTATGT 1386526
Score = 105 bits (116), Expect = 8e-17
Identities = 174/250 (70%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || | |||||| |||||| |||||||||||||| | || |||||
Sbjct 2175451 GCCTTCTGGTAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 2175510
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| ||||| | ||
Sbjct 2175511 TTCTCCATGAAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACG 2175570
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| || ||||||||||| ||||||| || |||||||||||
Sbjct 2175571 AGGAGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGC 2175630
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||| | | |||||| | ||| || ||||| ||| |||
Sbjct 2175631 AGGGCACAAGGGAGAGCCTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATA 2175690
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 2175691 ATGT-CCTGG 2175699
Score = 87.8 bits (96), Expect = 2e-11
Identities = 175/251 (70%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGA 869273
|| || ||||||||||| |||||||||||||| |||||| | || || || ||| ||
Sbjct 2175802 AGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG--GAAGCAAAGGCACCGCTGA 2175859
Query 869274 AAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT 869333
| ||||| ||||| ||||| ||||| | | || |||| || ||| || || | ||
Sbjct 2175860 AGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAG--GTAGA-GTTCT 2175916
Query 869334 CCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGA 869393
| | |||||| || ||||| || ||||| || | | | || | ||||| |
Sbjct 2175917 TATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAA 2175976
Query 869394 TGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGC 869452
|||| ||||||| || | | ||| |||||||||| ||||| ||||| |||||
Sbjct 2175977 CGGCGTTGAAGAGGTATGTAC-GCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGG 2176035
Query 869453 GAATAGGTCTC 869463
|| || || ||
Sbjct 2176036 GAGTATGTTTC 2176046
>seq1
Length=11760891
Score = 104 bits (114), Expect = 3e-16
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| ||||| || || || ||||| ||||| | ||| | || |||||||||
Sbjct 5472822 GACAGCACTGGCGGAACCGTCACCTGCGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 5472881
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| |
Sbjct 5472882 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 5472941
Query 19167 AAGGGATTCGAG 19178
|||| ||||||
Sbjct 5472942 AAGGCCTTCGAG 5472953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107138707611902
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |