Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq3 147 2e-30
seq2 107 2e-18
>seq3
Length=7792947
Score = 147 bits (162), Expect = 2e-30
Identities = 418/632 (66%), Gaps = 19/632 (3%)
Strand=Plus/Minus
Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361
||||||||||||||| || | || ||| ||||||||| ||||| ||| | | ||
Sbjct 1387086 CTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 1387027
Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421
| || ||| |||||||| | |||| ||||||| || ||| ||| ||||||| |||||
Sbjct 1387026 TTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATC 1386967
Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481
|| ||||| | ||| || | || || || || || ||| | || || | |
Sbjct 1386966 AGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTA-CCGTGATTC- 1386909
Query 139482 TTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539
|||| | | |||||| || || ||||| |||||||||||||| || |||||||| |
Sbjct 1386908 TTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAG 1386849
Query 139540 GCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596
|| || || ||| ||||| || || |||| || ||| || ||||| || |||
Sbjct 1386848 GCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGC 1386789
Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCG 139652
| ||| || | | |||| | | || || ||||| || | | | | | | ||
Sbjct 1386788 AGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT---- 1386733
Query 139653 AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712
|| |||| || | || | ||| || || || | | ||||| || | | ||
Sbjct 1386732 GGCACGGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACA 1386673
Query 139713 A-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771
| || | | || ||||| ||||| |||||||| |||| ||| || || ||||
Sbjct 1386672 AGTCTTG-AGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 1386614
Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831
|||| ||||| || || || || ||||| || | ||| || || || || ||||
Sbjct 1386613 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 1386554
Query 139832 A-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890
| | ||| || ||||| | | ||| || || | | | | | ||||||| || |
Sbjct 1386553 AGAACTTGCTT-GACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG 1386495
Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTG 139922
|| || |||| ||||||||| | |||||| ||
Sbjct 1386494 ATTCCAACAGCGACTCGCATGATCATATGCTG 1386463
>seq2
Length=8997558
Score = 107 bits (118), Expect = 2e-18
Identities = 148/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || | ||||| || |||||||| ||||| || || |
Sbjct 2573440 ACCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCA 2573381
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || | || | || || ||||| || ||||| || || || ||||| |||
Sbjct 2573380 TCTGATACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGAT 2573321
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || || ||||| || ||||| || ||||| |||||| | | | | || |||||
Sbjct 2573320 CAGCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTAC 2573261
Query 24881 AACATTCAAAAGGAATCGACACTACAC 24907
|||||||| ||||| ||||| || |||
Sbjct 2573260 AACATTCAGAAGGAGTCGACTCTCCAC 2573234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897566257680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |