Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 seq2 107 2e-18 >seq3 Length=7792947 Score = 147 bits (162), Expect = 2e-30 Identities = 418/632 (66%), Gaps = 19/632 (3%) Strand=Plus/Minus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||||||||||||||| || | || ||| ||||||||| ||||| ||| | | || Sbjct 1387086 CTCGTACTTTTCGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCA 1387027 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 | || ||| |||||||| | |||| ||||||| || ||| ||| ||||||| ||||| Sbjct 1387026 TTCGTTAGGGCACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATC 1386967 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 || ||||| | ||| || | || || || || || ||| | || || | | Sbjct 1386966 AGGGATCCAAAGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTA-CCGTGATTC- 1386909 Query 139482 TTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 |||| | | |||||| || || ||||| |||||||||||||| || |||||||| | Sbjct 1386908 TTTCGGAGATCAAGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAG 1386849 Query 139540 GCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 || || || ||| ||||| || || |||| || ||| || ||||| || ||| Sbjct 1386848 GCACCAGGTCGCTTGTTACCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGC 1386789 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCG 139652 | ||| || | | |||| | | || || ||||| || | | | | | | || Sbjct 1386788 AGCATGGGAACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGT---- 1386733 Query 139653 AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712 || |||| || | || | ||| || || || | | ||||| || | | || Sbjct 1386732 GGCACGGATTCGGTGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACA 1386673 Query 139713 A-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 | || | | || ||||| ||||| |||||||| |||| ||| || || |||| Sbjct 1386672 AGTCTTG-AGGGTATCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGC 1386614 Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831 |||| ||||| || || || || ||||| || | ||| || || || || |||| Sbjct 1386613 ATGATGAAAGCTGAGGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA 1386554 Query 139832 A-CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGG 139890 | | ||| || ||||| | | ||| || || | | | | | ||||||| || | Sbjct 1386553 AGAACTTGCTT-GACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAG 1386495 Query 139891 ATACCGACAGAGACTCGCATCAGCATATGTTG 139922 || || |||| ||||||||| | |||||| || Sbjct 1386494 ATTCCAACAGCGACTCGCATGATCATATGCTG 1386463 >seq2 Length=8997558 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || | ||||| || |||||||| ||||| || || | Sbjct 2573440 ACCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACTATTACCCTCGAGGTTGAGTCA 2573381 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || ||||| || ||||| || || || ||||| ||| Sbjct 2573380 TCTGATACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGAT 2573321 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||| || ||||| || ||||| |||||| | | | | || ||||| Sbjct 2573320 CAGCAGCGATTGATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTAC 2573261 Query 24881 AACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||||| ||||| || ||| Sbjct 2573260 AACATTCAGAAGGAGTCGACTCTCCAC 2573234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897566257680