Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq3 143 4e-28
seq4 120 5e-21
>seq3
Length=7792947
Score = 143 bits (158), Expect = 4e-28
Identities = 222/309 (72%), Gaps = 11/309 (4%)
Strand=Plus/Plus
Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421
||||| ||||| || || ||||||||||| |||||||||||||| ||||||| | |
Sbjct 2175787 TCGTTAGAAAAGCTCAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAA--G 2175844
Query 794422 AAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAA 794479
|| || ||| ||| ||||| ||||| ||||| ||||| | || || |||| || |
Sbjct 2175845 CAAAGGCACCGCTGAAGAAGATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGA 2175904
Query 794480 AAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACC 794538
| || || | || | | |||||| || ||||| || ||||| || | |
Sbjct 2175905 AGGT----AGAGTTCTTATCCTGGATCCATCGGATGGCCCAATCCGCCTTCTTTCGGATG 2175960
Query 794539 GAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTA 794597
| || | ||||| | |||| ||||||| || | || | | |||||||||| |||
Sbjct 2175961 CAAGGAATAGTGTCAACGGCGTTGAAGAGGTATGTACG-CTGGGCAGGGTCCTTGATGTA 2176019
Query 794598 GGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCC 794657
||| ||||||||||| ||||| || || ||||||||||| || || ||||||||| ||
Sbjct 2176020 GGTATCGATGAGGAGGGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACC 2176079
Query 794658 ATAAAAGCA 794666
||| |||||
Sbjct 2176080 ATAGAAGCA 2176088
Score = 107 bits (118), Expect = 3e-17
Identities = 166/233 (71%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976
|||||| |||||| |||||||||||||| | || ||||| |||||| | |||
Sbjct 2175469 ACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAA 2175528
Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACG 794036
||||||| | | ||| ||||||| ||||| | | || || || || ||||||
Sbjct 2175529 GGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAACGAGGAGACGATCAGCGACG 2175588
Query 794037 AATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGA 794095
||||| |||||||| ||||||| || ||||||||||| || || || ||| || |
Sbjct 2175589 AATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCACAAGGG-AGAGC 2175647
Query 794096 CTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148
||| | | |||||| | ||| || ||||| ||| |||| || | |||||
Sbjct 2175648 CTCAGTAAGAAACTCCTGCTCAATAGAAACGGCATCGGTGATAATGT-CCTGG 2175699
>seq4
Length=9395062
Score = 120 bits (132), Expect = 5e-21
Identities = 87/101 (86%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 2035653 AACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATC 2035712
||||||||||| ||||||||||| ||||| | || ||||||||||| |||||| | |||
Sbjct 1698085 AACTACCTCGATATCAAGCCCCTTCTCGACGTTGGATGCAAGACCGTCGCCAACATGATC 1698026
Query 2035713 AAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
||||||||| | |||||||| |||||||||||||| || ||
Sbjct 1698025 AAGGGCAAGGCACCCGAGGAAATCCGCAAGACCTTCAATAT 1697985
Score = 98.7 bits (108), Expect = 2e-14
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | |
Sbjct 5109113 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 5109054
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| ||||| || | |||||| ||||| ||||
Sbjct 5109053 GATGAGGCGGACAGAGGTCTGAATCTCTCGGG 5109022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916245761752634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |