Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 1e-17
>seq1
Length=11760891
Score = 107 bits (118), Expect = 1e-17
Identities = 655/1041 (63%), Gaps = 17/1041 (2%)
Strand=Plus/Plus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
||||| |||||||| | ||| || ||||| ||||| || || || || | |||||||
Sbjct 2730317 ATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAACACCACGGGGAGCAGGG 2730376
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
||||| || | | || | |||| || || || || ||| | || |||
Sbjct 2730377 GGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTGGTGCGCTGGCGCTCA 2730436
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620
|||||| | | |||||| || ||| || || || || | || | || || |
Sbjct 2730437 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 2730496
Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680
|| || || ||||| || ||||| | || | |||||||| |||||||||||
Sbjct 2730497 GACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGCG 2730556
Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738
|| || | ||| ||||| || || | ||| || | || | ||| | || | | ||
Sbjct 2730557 GTCTCGATACCGAGAGAGAGGGGGGCGACGTCGAGGAGCAGAATCTCGTTGGTGGCCTTG 2730616
Query 281739 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797
| || | | |||| |||||||| || || | ||| ||||| || |||||||| |||
Sbjct 2730617 CTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 2730676
Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 281857
|||||||| | | | || | | || || ||||| | | | | || | |||
Sbjct 2730677 TCAGGATTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAGTCGGTGATGAGCT-TCTG 2730735
Query 281858 -ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916
|| || ||||| | ||||| || || | || || || || || | || || ||
Sbjct 2730736 GACACGGGGGATACGGGTAGATCCACCGACGAGGACGATCTCGTGGACGAGGGACTTGTC 2730795
Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976
| || | || | || || ||||| | | | || || | ||
Sbjct 2730796 GATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGATGGTGGATCGGAAGAGATCCTG 2730855
Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034
|| || || ||||| ||| | || || || | || || ||||| || |||||
Sbjct 2730856 GCAGAGCTCCTCGAAACGAGCACGGGT--GATGGAAGTGTAGAAATCAATACCCTCGAAG 2730913
Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094
| ||| || | ||||| | || |||| |||||||| || | || || || || |||
Sbjct 2730914 AGAGAGTCGATCTCAATGGAGGTCTGAGCGGAAGAAGAGAGAGTTCGCTTGGCGCGCTCA 2730973
Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA--TTGATTC--AAATCTGTTTTATA 282150
|| || || | || | ||| | || | || ||| | | | ||| | ||||
Sbjct 2730974 CAAGCGGTTCGGAGACGTCGAAGAGCA----CGGACGTTGGTGCTTAGATCCTTCTTATG 2731029
Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210
|||| |||||| || | ||| | | || || || || || ||||||||||| ||
Sbjct 2731030 CTTTCGCTTGAACTCGTTAACGAAGTGGTTAACGAGGCGGTTGTCGAAATCTTCACCACC 2731089
Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270
||| | ||| | || | |||| | || | ||| | || || |||| | | ||
Sbjct 2731090 CAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGTAAGGAG 2731149
Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330
|| ||||| ||| |||||||| | ||| || || || || || || ||
Sbjct 2731150 AGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACCCTCAAC 2731209
Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390
|| || |||||||| || |||| || ||||| || || || || || |||| | |||
Sbjct 2731210 CTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCGGAGAAC 2731269
Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450
|| ||||| || || || ||||| || || || || | || || ||||| || ||
Sbjct 2731270 GTTGAGACCGGCGATGAGACCCGCATCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTA 2731329
Query 282451 TGCAGGAACAGTAATAACGGC 282471
||||| || || | ||||||
Sbjct 2731330 GGCAGGGACGGTGACAACGGC 2731350
Score = 98.7 bits (108), Expect = 7e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
||||| ||||||||| | |||| || |||||||| |||||||||||| | |||||||||
Sbjct 3003645 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 3003704
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399
|| || |||||| |||| | || || | ||| |||| || ||||| ||||
Sbjct 3003705 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCATGAGGTCGGTGTGCCTC 3003756
Score = 86.0 bits (94), Expect = 5e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
|| ||||||||||| | ||||||||||| |||||| | ||| |||| || | || |||
Sbjct 3005088 GAGTTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTCATTGATACTGCGGTCAAGACT 3005147
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239
||||| |||||||| ||||| || | | |||||| ||||||||
Sbjct 3005148 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCTCTTGAAGA 3005194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740630105425356
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |