Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-17 >seq1 Length=11760891 Score = 107 bits (118), Expect = 1e-17 Identities = 655/1041 (63%), Gaps = 17/1041 (2%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| || ||||| ||||| || || || || | ||||||| Sbjct 2730317 ATACCGTTGGCATCGAGATCGAAGGTGACCTCAATCTGGGGAACACCACGGGGAGCAGGG 2730376 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | |||| || || || || ||| | || ||| Sbjct 2730377 GGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTGGTGCGCTGGCGCTCA 2730436 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | |||||| || ||| || || || || | || | || || | Sbjct 2730437 CCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAGGTAGAGAAGACCTCG 2730496 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || ||||| || ||||| | || | |||||||| ||||||||||| Sbjct 2730497 GACTTCTTGGTGGGAATGGTGGTGTTGCGGGGGATGAGCTTGGTCATCATACCACCAGCG 2730556 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 281738 || || | ||| ||||| || || | ||| || | || | ||| | || | | || Sbjct 2730557 GTCTCGATACCGAGAGAGAGGGGGGCGACGTCGAGGAGCAGAATCTCGTTGGTGGCCTTG 2730616 Query 281739 CATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | || | | |||| |||||||| || || | ||| ||||| || |||||||| ||| Sbjct 2730617 CTAGAGGTGTCACCAGAGAGAATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCA 2730676 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT 281857 |||||||| | | | || | | || || ||||| | | | | || | ||| Sbjct 2730677 TCAGGATTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAGTCGGTGATGAGCT-TCTG 2730735 Query 281858 -ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 || || ||||| | ||||| || || | || || || || || | || || || Sbjct 2730736 GACACGGGGGATACGGGTAGATCCACCGACGAGGACGATCTCGTGGACGAGGGACTTGTC 2730795 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 | || | || | || || ||||| | | | || || | || Sbjct 2730796 GATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGATGGTGGATCGGAAGAGATCCTG 2730855 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 || || || ||||| ||| | || || || | || || ||||| || ||||| Sbjct 2730856 GCAGAGCTCCTCGAAACGAGCACGGGT--GATGGAAGTGTAGAAATCAATACCCTCGAAG 2730913 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 | ||| || | ||||| | || |||| |||||||| || | || || || || ||| Sbjct 2730914 AGAGAGTCGATCTCAATGGAGGTCTGAGCGGAAGAAGAGAGAGTTCGCTTGGCGCGCTCA 2730973 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA--TTGATTC--AAATCTGTTTTATA 282150 || || || | || | ||| | || | || ||| | | | ||| | |||| Sbjct 2730974 CAAGCGGTTCGGAGACGTCGAAGAGCA----CGGACGTTGGTGCTTAGATCCTTCTTATG 2731029 Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 |||| |||||| || | ||| | | || || || || || ||||||||||| || Sbjct 2731030 CTTTCGCTTGAACTCGTTAACGAAGTGGTTAACGAGGCGGTTGTCGAAATCTTCACCACC 2731089 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 ||| | ||| | || | |||| | || | ||| | || || |||| | | || Sbjct 2731090 CAAGTGAGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGTAAGGAG 2731149 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 || ||||| ||| |||||||| | ||| || || || || || || || Sbjct 2731150 AGAGACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACCCTCAAC 2731209 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 || || |||||||| || |||| || ||||| || || || || || |||| | ||| Sbjct 2731210 CTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCGGAGAAC 2731269 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 || ||||| || || || ||||| || || || || | || || ||||| || || Sbjct 2731270 GTTGAGACCGGCGATGAGACCCGCATCCTTGGTAGCCTGACGCTGAGAGTCGTTGAAGTA 2731329 Query 282451 TGCAGGAACAGTAATAACGGC 282471 ||||| || || | |||||| Sbjct 2731330 GGCAGGGACGGTGACAACGGC 2731350 Score = 98.7 bits (108), Expect = 7e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| | |||| || |||||||| |||||||||||| | ||||||||| Sbjct 3003645 GGTAAGGAAGGTCGTCTCCGAGGTAACTTGATGGGTAAGCGTGTCGATTTCTCTGCACGT 3003704 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 || || |||||| |||| | || || | ||| |||| || ||||| |||| Sbjct 3003705 ACCGTCATTACTGGTGATGCCAACCTTTCCCTCCATGAGGTCGGTGTGCCTC 3003756 Score = 86.0 bits (94), Expect = 5e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 || ||||||||||| | ||||||||||| |||||| | ||| |||| || | || ||| Sbjct 3005088 GAGTTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTCATTGATACTGCGGTCAAGACT 3005147 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGA 435239 ||||| |||||||| ||||| || | | |||||| |||||||| Sbjct 3005148 GCTGAAACTGGTTACATTCAGCGACGATTGGTCAAGGCTCTTGAAGA 3005194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740630105425356