Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 223 4e-53 >seq3 Length=7792947 Score = 223 bits (246), Expect = 4e-53 Identities = 1010/1583 (64%), Gaps = 41/1583 (3%) Strand=Plus/Minus Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583 ||| ||||| || || || ||| |||||| || | ||||| | | ||| ||||| Sbjct 1388022 AATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGGGGATGTTCTG 1387963 Query 110584 GATGGAACCCCCCGCCTTCACCA----TGAGATCCTTCATATCCTTGGACCAGAGACCAA 110639 ||| ||||| | ||| || || | | ||||||| | | |||||| ||||| | Sbjct 1387962 GATAGAACC----GTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAAGACCCA 1387907 Query 110640 TCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTC 110699 | | || || |||| || |||||||| ||||| || || ||| || Sbjct 1387906 TGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTC 1387847 Query 110700 TTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTG 110759 | |||||||||| | ||||| || ||||||||||| || || || | || || | Sbjct 1387846 GGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAATCTGCG 1387787 Query 110760 CGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGA 110819 ||| ||| || ||||| || || | | |||||||| || | ||| | ||||| Sbjct 1387786 AGGTACTGGCGGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGA 1387727 Query 110820 TGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTC 110877 || ||| |||||||| | | | || || || || |||| ||||||| Sbjct 1387726 CATCCTCTCGGAGGGGTTCCCAGTCCCAAAGGTCAGAG-GGCTTGACATTCC-ACATGTC 1387669 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 ||||| || | || | || || || || |||| ||||| |||| ||||| | Sbjct 1387668 GAACTGGAGAATACCCTCAGAGGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTC 1387609 Query 110938 TTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 110996 | || | || ||||| || |||| ||||| || ||||| || ||||| | Sbjct 1387608 CTTGGCGAGTTGCACAGA-CGTAGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCT 1387550 Query 110997 CATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCG 111056 |||| ||| || ||| || ||||| | |||| || ||| |||| | Sbjct 1387549 TGTTCAGCTCACGAGCCTCAGGAGACTCAAAGGGCATGCGGAGGGCAAGAAAGGCATCAG 1387490 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 |||||||||| ||||| | |||||| |||| ||| ||||| || || || || | Sbjct 1387489 CGAGACCTTGCACACCAAGACCAATGGGTCGGTGACGCATGTTGCTGTTACGAGCCTCTT 1387430 Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 || || || || ||| |||| ||| | ||| | ||||| | |||| Sbjct 1387429 GGACAGGGTAGTGGTTGACGTCGATGATCTTGTTCAAATTGCGGACAACAACTTGAGTGA 1387370 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAA 111233 || || || || | | || | || || ||||||| ||| | | || | Sbjct 1387369 CCTCGTGCAGCTTCTTGAAGTCGTA---GCAAGCATCTTCATAGTTGATAAAAGAGGGCA 1387313 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 | | | || || | ||||||||||| |||||| | ||| || | || | Sbjct 1387312 GAGACAAGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCT 1387253 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 | || || | |||||| || || || || | ||||||||||||||||| |||| Sbjct 1387252 CAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGC 1387193 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 | |||||||||||||||| | || | || ||||| ||||| | | ||||| || | Sbjct 1387192 AGTGATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGT 1387133 Query 111414 TCCAAACAT-CGGCGGCTGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTG 111470 ||||| | | | | || | || | | ||| ||| | ||||| |||||||||| Sbjct 1387132 ACCAAAGTTTCTGAGCCTTGATAGACTTGCGA---CCCTTACCCTCTCTCTCGTACTTTT 1387076 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGA 111529 ||| || || ||||| || ||||| ||| | || || || || || || || Sbjct 1387075 CGTACAGAGCCTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGG-GCATTCGTTAGGG 1387017 Query 111530 CAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 || | |||| ||||| || | ||| || |||||||||||||| || || ||||| Sbjct 1387016 CACATGAGAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAA 1386957 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 || | | | || || || | | || |||| || | ||| || || ||| | ||| Sbjct 1386956 AGAGCTAAGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCA 1386897 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCC 111703 |||||||| | || || ||||||||||| ||||| |||| |||| || || | Sbjct 1386896 AGGAACTCGAAGACGTCGGCGTGCCATGGTTCAAGGTAGATGGCGAAGGCACCAGGTCGC 1386837 Query 111704 TTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 || | ||| | || | || || || || ||| ||| || || || ||||| ||| Sbjct 1386836 TTGTTA---CCACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGA 1386780 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCA 111823 | ||||| | || |||||| || || || ||| | |||| | | Sbjct 1386779 ACGATACCGTTGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGG 1386720 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 ||| || || |||||||| |||||| ||| || || ||||| | | || || Sbjct 1386719 TGGGCGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTA 1386660 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | |||||||| | || ||||||||| | | | ||||||||| || | ||| Sbjct 1386659 TCGTAGATACCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGA 1386600 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GG 112001 || ||| ||||| || ||||| | || || |||| ||| ||| | | |||| | Sbjct 1386599 GGCTGTGGAGTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGA--AGAACTTGCTTG 1386542 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| || |||||||||||||||| ||||| || || || ||| || | |||| Sbjct 1386541 ACATGAGGTTGTATGTCTCCAAGACACGCTCAATATCGTCACCCCAGATTCCAACAGCGA 1386482 Query 112062 CCCGCATGAACATGTACTGTGGG 112084 | ||||||| ||| | ||| ||| Sbjct 1386481 CTCGCATGATCATATGCTGCGGG 1386459 Score = 109 bits (120), Expect = 7e-19 Identities = 335/507 (66%), Gaps = 26/507 (5%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 2175460 TAGTCAGCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 2175519 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484 ||||| || || || | | || | | | | || | | |||| |||| Sbjct 2175520 AAGTCGAAAGGGTTGGTGGACTTGTACACCTTCTCGTTGCCGAGAGCAAC------GAGG 2175573 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | || | || ||||||| ||| | |||||||| |||| ||| Sbjct 2175574 AGACGATCAGCGACGAATTCGATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGG 2175633 Query 122545 TTACATGGGAGTGCGTCC--AAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGA 122602 ||| ||||| || || |||| ||| | | |||||| ||| || || | | | Sbjct 2175634 GCACAAGGGAGAGCCTCAGTAAGA--AACTCCTGCTCAATAGAAACGGCATCGGTGATAA 2175691 Query 122603 TGGCGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGG 122659 || | ||||| | | | ||| ||| || | || | || ||| || || Sbjct 2175692 TGTCCTGGATCATCTGTTTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAGA--CA-GG 2175748 Query 122660 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTG 122719 |||| || ||| ||||||||||| || ||||| || || || || |||| ||||| | Sbjct 2175749 CAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAGACCAG 2175808 Query 122720 GCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||| || |||||||| | ||| | || | ||| || | ||| |||||||||| Sbjct 2175809 GCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGCACCGCTGAAGAAGATA 2175867 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAA 122837 ||||| || ||||| |||| ||| || | ||||||| || | ||| | | | Sbjct 2175868 CCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCGAAGGTAGAG-TTCTTATCCTGGAT 2175926 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTT 122864 |||| || ||||| | ||||||||| Sbjct 2175927 CCATCGGATGGCCCAATCCGCCTTCTT 2175953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031952897600