Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-38 seq4 84.2 3e-11 >seq3 Length=7792947 Score = 174 bits (192), Expect = 2e-38 Identities = 957/1512 (63%), Gaps = 63/1512 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| ||||||| || || | || || || || || ||||| ||| Sbjct 1386459 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 1386518 Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || ||||| |||| | | ||| ||| |||| || || | Sbjct 1386519 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCAAGCCCCACTTTA 1386576 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || ||||| ||| || || | || ||||||||| | | | |||||| Sbjct 1386577 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAG 1386636 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | |||||||| | || || | | ||||| || || ||| |||| Sbjct 1386637 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 1386696 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| || || ||| | | |||| | ||| || || || Sbjct 1386697 GGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 1386756 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 |||||| || | ||||| |||| ||||| || || || ||| ||| || || || Sbjct 1386757 AATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 1386816 Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632 || | || | ||| | ||| || || |||| |||| ||||| |||||| Sbjct 1386817 GTTGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGG 1386873 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | ||||||||||| | || || || ||| | ||||||| ||| Sbjct 1386874 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGC 1386933 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || || || |||| ||||| ||||| || ||||| ||||||||| | || ||| Sbjct 1386934 GCT--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGA 1386991 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTG 104809 | ||| | ||| ||||| | || || || || || ||||| || | || | Sbjct 1386992 GAAACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTAC 1387050 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869 ||||| || ||||| || || ||| |||||||||| ||| ||| || | | || | Sbjct 1387051 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGT 1387108 Query 104870 GTGCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | || ||| | | ||| | || ||||| || | || || ||||| || | | Sbjct 1387109 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAACC 1387168 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||| ||||| || ||| || | |||||||| |||||||| | ||| | Sbjct 1387169 CTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACCA 1387228 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || ||||| || || || || ||| | |||| | | |||||| |||| Sbjct 1387229 TCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTG 1387288 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGACAA 105098 | || ||||| || || | |||| || ||| |||| ||| | | | Sbjct 1387289 TTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTTATCAACTATGAAGATGC--TTGCTA 1387346 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 ||| || | | || || ||||| || || || ||| | || | |||| Sbjct 1387347 CGAC--TTCA-----AGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATTTGAACA 1387399 Query 105159 GAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACC 105218 | || || || ||||| || | |||||||| || ||| | |||| Sbjct 1387400 AGATCATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGCAACATGCGTCACC 1387459 Query 105219 GTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC---G 105275 | || |||||||| ||||| || |||||||| |||| | ||||| | || | Sbjct 1387460 GACCCATTGGTCTTGGTGTGCAAGGTCTCGCTGATG---CCTTTCTTGCCCTCCGCATGC 1387516 Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335 | ||||| || || || || | || || || || |||||||| || |||| Sbjct 1387517 CCTTTGAGTCTCCTGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCACG 1387576 Query 105336 CCGCTCTT--GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 | || ||| | | || || | | | || ||| || ||||| || ||||| | Sbjct 1387577 CTGCCCTTACTACGTCTGTGCA-ACTCGCCA-AGGAGGAAGGTCCCTACTCCACCTTCAA 1387634 Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AA 105450 ||| || || || || | || | || || || || |||||| | | || || | Sbjct 1387635 GGGCTCCCCTGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTCAAGCCCTCTGA 1387694 Query 105451 GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510 ||| | ||||||||| | ||| || ||||| | ||| | || ||||| Sbjct 1387695 CCTT---TGGGACTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAG 1387751 Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 ||| ||| | ||||| ||||| || ||| ||| | || || | || || || ||||| Sbjct 1387752 TCTGCTCGTTGCTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAATG 1387811 Query 105571 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 105630 |||||| || ||||| | |||||||| | | || ||| || || ||||| | | Sbjct 1387812 CTTTGAGCCTTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGT 1387871 Query 105631 TGTCAA---CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687 |||||| | || |||| |||| || || || ||||| |||||| | | ||| Sbjct 1387872 TGTCAACCCCTGGCTTCTCAAGGAT---CTTGTCGACATGGGTCTTTGGTCCGATGCTAT 1387928 Query 105688 GAAGGATCTCAT 105699 |||| | | ||| Sbjct 1387929 GAAGAACCGCAT 1387940 Score = 123 bits (136), Expect = 3e-23 Identities = 350/525 (67%), Gaps = 17/525 (3%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 94497 ||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | | Sbjct 2176265 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 2176206 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | | || | | ||||| |||| || || ||||| |||| ||||| || || Sbjct 2176205 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 2176146 Query 94558 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615 || ||||||| | | | | | | || | ||||| || |||| | || || ||| Sbjct 2176145 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 2176088 Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674 |||||||| | ||| |||| ||| | | | || || |||||| ||| Sbjct 2176087 GCTTCTATGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 2176029 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || || | || || ||||| ||| || | | ||||| | ||| | | || Sbjct 2176028 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 2175969 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 94791 |||| || || | |||||| ||||||||||| || ||| | |||| || || Sbjct 2175968 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 2175910 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 | |||| ||| |||| || | || ||||| |||||||||||||||||| ||| Sbjct 2175909 --TACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 2175852 Query 94852 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 |||| ||| | || | |||||||||||||| || |||||||| ||||| |||| || Sbjct 2175851 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 2175793 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || |||||||| ||||| || ||| || ||||| Sbjct 2175792 TAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGC 2175748 >seq4 Length=9395062 Score = 84.2 bits (92), Expect = 3e-11 Identities = 179/262 (68%), Gaps = 9/262 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||||||||| || || |||| |||||| || || | || | | | || || Sbjct 1338354 GGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 1338413 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821 ||| ||||||||| | || ||||| ||||||||||| || || | | || || Sbjct 1338414 ATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAACCGCTCAC 1338473 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | || | |||||| || ||| ||||| || |||| ||| || | |||||||| | Sbjct 1338474 ACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1338532 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 9938 |||| || || || | | ||||||||||| |||||||| || || |||| | Sbjct 1338533 TACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 1338592 Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959 ||||||| ||||| ||||| Sbjct 1338593 ---TCTCAGGCTGCTTCAAGAA 1338611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260756255440