Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq3 174 2e-38
seq4 84.2 3e-11
>seq3
Length=7792947
Score = 174 bits (192), Expect = 2e-38
Identities = 957/1512 (63%), Gaps = 63/1512 (4%)
Strand=Plus/Plus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| | ||| ||||||| || || | || || || || || ||||| |||
Sbjct 1386459 CCCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGT 1386518
Query 104281 CTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTC 104338
||||||||||||| || ||||| |||| | | ||| ||| |||| || || |
Sbjct 1386519 CTTGGAGACATACAACCTCATGTCAAGCAAGTTCT--TCACTCATGCAAGCCCCACTTTA 1386576
Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398
||||| || ||||| ||| || || | || ||||||||| | | | ||||||
Sbjct 1386577 TTCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAG 1386636
Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458
||| || | |||||||| | || || | | ||||| || || ||| ||||
Sbjct 1386637 GACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCT 1386696
Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518
|| |||||||| || || ||| | | |||| | ||| || || ||
Sbjct 1386697 GGTGGTATTGGCTTGAACGCCCACCGAATCCGTGCCACTGGCTCTTACATCGCCGGTACC 1386756
Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578
|||||| || | ||||| |||| ||||| || || || ||| ||| || || ||
Sbjct 1386757 AATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTAC 1386816
Query 104579 GTAAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632
|| | || | ||| | ||| || || |||| |||| ||||| ||||||
Sbjct 1386817 GTTGACCAGGGTGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGG 1386873
Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690
||||| || || | ||||||||||| | || || || ||| | ||||||| |||
Sbjct 1386874 CACGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGC 1386933
Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
| | || || || |||| ||||| ||||| || ||||| ||||||||| | || |||
Sbjct 1386934 GCT--CGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGA 1386991
Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTG 104809
| ||| | ||| ||||| | || || || || || ||||| || | || |
Sbjct 1386992 GAAACGGCGAATGGACTCTCATGTGCCCTAACGAATGC-CCTGGCCTTGCTGACTGCTAC 1387050
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACG 104869
||||| || ||||| || || ||| |||||||||| ||| ||| || | | || |
Sbjct 1387051 GGTGACGAATTTGAGGCTCTGTACGAAAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGT 1387108
Query 104870 GTGCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927
| || ||| | | ||| | || ||||| || | || || ||||| || | |
Sbjct 1387109 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACAGAGACCGGAAACC 1387168
Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987
| | |||||| ||||| || ||| || | |||||||| |||||||| | ||| |
Sbjct 1387169 CTTTCATGCTCTACAAGGATCACTGCAATCGCAAGAGTAACCAAAAGAACCTTGGTACCA 1387228
Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047
|| || ||||| || || || || ||| | |||| | | |||||| ||||
Sbjct 1387229 TCCGAAGCTCCAACCTGTGCACTGAGATCATTGAATACTGCGCCCCTGATGAGGTCGCTG 1387288
Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGACAA 105098
| || ||||| || || | |||| || ||| |||| ||| | | |
Sbjct 1387289 TTTGCAACCTTGCCTCCTTGTCTCTGCCCTCTTTTATCAACTATGAAGATGC--TTGCTA 1387346
Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158
||| || | | || || ||||| || || || ||| | || | ||||
Sbjct 1387347 CGAC--TTCA-----AGAAGCTGCACGAGGTCACTCAAGTTGTTGTCCGCAATTTGAACA 1387399
Query 105159 GAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACC 105218
| || || || ||||| || | |||||||| || ||| | ||||
Sbjct 1387400 AGATCATCGACGTCAACCACTACCCTGTCCAAGAGGCTCGTAACAGCAACATGCGTCACC 1387459
Query 105219 GTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC---G 105275
| || |||||||| ||||| || |||||||| |||| | ||||| | || |
Sbjct 1387460 GACCCATTGGTCTTGGTGTGCAAGGTCTCGCTGATG---CCTTTCTTGCCCTCCGCATGC 1387516
Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335
| ||||| || || || || | || || || || |||||||| || ||||
Sbjct 1387517 CCTTTGAGTCTCCTGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCACG 1387576
Query 105336 CCGCTCTT--GAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393
| || ||| | | || || | | | || ||| || ||||| || ||||| |
Sbjct 1387577 CTGCCCTTACTACGTCTGTGCA-ACTCGCCA-AGGAGGAAGGTCCCTACTCCACCTTCAA 1387634
Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AA 105450
||| || || || || | || | || || || || |||||| | | || || |
Sbjct 1387635 GGGCTCCCCTGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTCAAGCCCTCTGA 1387694
Query 105451 GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510
||| | ||||||||| | ||| || ||||| | ||| | || |||||
Sbjct 1387695 CCTT---TGGGACTGGGAACCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAG 1387751
Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570
||| ||| | ||||| ||||| || ||| ||| | || || | || || || |||||
Sbjct 1387752 TCTGCTCGTTGCTCCTATGCCTACCGCCAGTACCTCGCAGATTCTTGGCAACAACGAATG 1387811
Query 105571 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 105630
|||||| || ||||| | |||||||| | | || ||| || || ||||| | |
Sbjct 1387812 CTTTGAGCCTTACACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGT 1387871
Query 105631 TGTCAA---CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687
|||||| | || |||| |||| || || || ||||| |||||| | | |||
Sbjct 1387872 TGTCAACCCCTGGCTTCTCAAGGAT---CTTGTCGACATGGGTCTTTGGTCCGATGCTAT 1387928
Query 105688 GAAGGATCTCAT 105699
|||| | | |||
Sbjct 1387929 GAAGAACCGCAT 1387940
Score = 123 bits (136), Expect = 3e-23
Identities = 350/525 (67%), Gaps = 17/525 (3%)
Strand=Plus/Minus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTA---AAT 94497
||||| ||||| ||| | |||||||| |||||| | |||| ||||| | | | | |
Sbjct 2176265 TGGACAGCTGAGGAGATCGATCTCTCCAAGGATCTCCACGACTGGAACAACCGATTGACT 2176206
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
| | || | | ||||| |||| || || ||||| |||| ||||| || ||
Sbjct 2176205 TCAGACGAGCAATACTTCATCTCCCACATTCTTGCTTTCTTCGCTGCCTCCGACGGCATC 2176146
Query 94558 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615
|| ||||||| | | | | | | || | ||||| || |||| | || || |||
Sbjct 2176145 GTCAATGAGAATCTTGTTGAGCGATTCAGCGGC-GAGGTCCAGATCCCC-GAGGCTCGAT 2176088
Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674
|||||||| | ||| |||| ||| | | | || || |||||| |||
Sbjct 2176087 GCTTCTATGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAAACATACTCCCTCCTC 2176029
Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734
|| || | || || ||||| ||| || | | ||||| | ||| | | ||
Sbjct 2176028 ATCGATACCTACATCAAGGACCCTGCCCAGCGTACATACCTCTTCAACGCCGTTGACACT 2175969
Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTCG 94791
|||| || || | |||||| ||||||||||| || ||| | |||| || ||
Sbjct 2175968 ATTCCTTGCATCCGAAAGAAGGCGGATTGGGCCATCCGATGGATCCAGGATAAGAACTC- 2175910
Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851
| |||| ||| |||| || | || ||||| |||||||||||||||||| |||
Sbjct 2175909 --TACCTTCGCTCAGCGTCTTGTTGCTTTTGCTGCCGTTGAGGGTATCTTCTTCAGCGGT 2175852
Query 94852 TCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
|||| ||| | || | |||||||||||||| || |||||||| ||||| |||| ||
Sbjct 2175851 GCCTT-TGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTGAGCTTTTC 2175793
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||||||| || |||||||| ||||| || ||| || |||||
Sbjct 2175792 TAACGAGCTCATTTCTCGTGATGAGGGTCTTCACACCGACTTTGC 2175748
>seq4
Length=9395062
Score = 84.2 bits (92), Expect = 3e-11
Identities = 179/262 (68%), Gaps = 9/262 (3%)
Strand=Plus/Plus
Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762
|||||||||||| || || |||| |||||| || || | || | | | || ||
Sbjct 1338354 GGCATCAATCTCGTCGATAAAGATGATGCAAGGGGCGTTCTTACGGCCCTCGGCGAACAG 1338413
Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 9821
||| ||||||||| | || ||||| ||||||||||| || || | | || ||
Sbjct 1338414 ATCTCGTACACGCGAAGGTCCAACACCGACAAACATCTCAACGAATTCGGAACCGCTCAC 1338473
Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881
| || | |||||| || ||| ||||| || |||| ||| || | |||||||| |
Sbjct 1338474 ACTGAA-GAAGGGTACTCCAGACTCACCTGCCGTGGCCTTGGCAAGCAACGTCTTACCAG 1338532
Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGT 9938
|||| || || || | | ||||||||||| |||||||| || || |||| |
Sbjct 1338533 TACCGGGGGGCCCAGCCAAAATAGCACCTCGTGGGATCTTGGCACCTAGCTTTTCAAACT 1338592
Query 9939 ATCTCTCAGGTTGCTT-AAGAA 9959
||||||| ||||| |||||
Sbjct 1338593 ---TCTCAGGCTGCTTCAAGAA 1338611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260756255440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |