Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03] 6 sequences; 38,047,942 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 167 7e-36 seq2 136 1e-26 seq3 105 2e-17 >seq1 Length=11760891 Score = 167 bits (184), Expect = 7e-36 Identities = 690/1079 (64%), Gaps = 21/1079 (2%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 2731695 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 2731636 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || || | || || || | || || Sbjct 2731635 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 2731576 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || || | ||||| | |||| || || Sbjct 2731575 GTCTTCGACGCCAAGCGATTGATCGGCCGCAAGTTCGCCGATGCTGAGG--TC----CAG 2731522 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | ||| | || || || || || || | | | | ||| | || || || || Sbjct 2731521 GCCGATATGAAGCACTTCCCCTTCACAATCAT-CGACAAGGC--TGGCAAGCCCGCCATC 2731465 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || ||||| | || || ||||| || || || | ||| | Sbjct 2731464 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCGCCATGATC 2731405 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | |||||| | || | ||||| || || | | || ||| Sbjct 2731404 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCCGTT 2731345 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || ||||| || || || | |||||| || || || ||||| || | Sbjct 2731344 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCGGGTCTC 2731285 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || || || ||||| || ||||| || Sbjct 2731284 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 2731225 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||||| || | | ||| || || | || || || ||| | ||||||||| Sbjct 2731224 GGTCTTGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 2731165 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 2731164 ACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCC 2731105 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| |||||||| || || || |||||| || || ||||| Sbjct 2731104 GGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGCCTCGTTAACCACTTCGTTAAC 2731045 Query 349916 GAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAA--TCCTAGAGCAATGCGTCGC 349972 || || ||||| |||| ||| | ||| | | || ||| | || | || || Sbjct 2731044 GAGTTCAAGCG-AAAGCATAAGAAGGATCTAAGCACCAACGTCC--GTGCTCTTCGACGT 2730988 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || |||| || ||||| || || ||||| | | || ||| | | || ||||| ||| Sbjct 2730987 CTCCGAACCGCTTGTGAGCGCGCCAAGCGAACTCTCTCTTCTTCCGCTCAGACCTCCATT 2730928 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || ||||| || || | ||||||| | || || || |||||||| || Sbjct 2730927 GAGATCGACTCTCTCTTCGAGGGTATTGATTTCTACACTTCCATCACCCGTGCTCGTTTC 2730868 Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152 || || | || |||||| || || | || || | || || || || | | Sbjct 2730867 GAGGAGCTCTGCCAGGATCTCTTCCGATCCACCATCCAGCCCGTCGACCGTGTCCTTACC 2730808 Query 350153 GATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGT 350212 || || || || ||| | | | || | || | || ||||| ||||| ||| Sbjct 2730807 GACGCCAAGATCGACAAGTCCCTCGTCCACGAGATCGTCCTCGTCGGTGGATCTACCCGT 2730748 Query 350213 ATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCA 350272 || || || || || | | | || | || || || || || || | || Sbjct 2730747 ATCCCCCGTGTCCAGAAGCTCATCACCGACTACTTCAACGGAAAGGAGCCCAACAAGTCC 2730688 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331 || ||||| ||||| |||||||| || ||||| ||||| ||||| ||||| | ||||| Sbjct 2730687 ATCAATCCTGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCTATTCTCTCTGG 2730629 Score = 114 bits (126), Expect = 4e-20 Identities = 179/255 (70%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 378222 TCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACG 378281 |||||| ||| |||||||||| | ||| || || ||||||||||| | ||| | || Sbjct 3005174 TCGTCGCTGAATGTAACCAGTTTCAGCAGTCTTGACCGCAGTATCAATGAGACCTTCTCG 3005115 Query 378282 ACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTC 378341 |||| |||| || |||||||| || || |||| ||||| |||| | | || |||| Sbjct 3005114 ACCAGCCATGGCGTGGAAGAAAAACTCGCTAGGGGTAAGACCACGTAGGTAAGAGTTCTC 3005055 Query 378342 AATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATT 378401 | || || | || | || |||| ||||| || || ||||||| | ||||||| Sbjct 3005054 GACGAAACCACGGGCTTCGGGAGAATAATCATCCTTGGTGAAATGAGGCAGAGTACGATA 3004995 Query 378402 CTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAAC 378458 || || ||| | ||||| || ||||| || || | ||||||| |||| |||| Sbjct 3004994 CTTGAAACCAAAGGGAATGCGCTTTCCTTCGACGATTTGTTGACCGACAAGCGCAG---T 3004938 Query 378459 CATTTGAGCAATATT 378473 |||||| | ||| || Sbjct 3004937 CATTTGCGAAATGTT 3004923 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 377446 ATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAG 377505 ||||||| | || |||||||| | || || ||| || || | |||||||| || Sbjct 3005968 ATTTCTTTGAGACGAGGCACACCCAGGGTGACGTTC---TTGGAAGACACACCAGCGAAA 3005912 Query 377506 TGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACG 377565 ||||| || || || || | ||||| | ||||||||||| ||||| || || | ||| Sbjct 3005911 TGGAAGGTGTTCAGTGTCATCTGAGTGGCAGGCTCACCAATGGACTGGGCAGCCAAAACA 3005852 Query 377566 CCAACCATTTCTCCAGGATTGACAATAGC 377594 ||||||||||| ||||| ||||| | ||| Sbjct 3005851 CCAACCATTTCACCAGGGTTGACGAAAGC 3005823 >seq2 Length=8997558 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || || || ||||| ||||| || ||||| || | Sbjct 2573203 TTTGCATACCGCCACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGT 2573262 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| || || || || || || || || | || ||||||| Sbjct 2573263 AATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 2573322 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || |||||||| || | || || || || || | |||||||| Sbjct 2573323 CAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTATCAGATG 2573382 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || |||| ||||| ||||| | || || || || |||||||| Sbjct 2573383 ACTCAACCTCGAGGGTAATAGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2573437 Score = 109 bits (120), Expect = 2e-18 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || ||||| ||||| || || || || | Sbjct 2572975 TTTGCATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 2573034 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || || || || || | || ||||||| Sbjct 2573035 AGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGAT 2573094 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || ||||| || || | || ||||| || || | || |||| Sbjct 2573095 CAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGATG 2573154 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| || || || || || || || || ||||| Sbjct 2573155 ACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 2573209 Score = 87.8 bits (96), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || ||||| || || || || || || || || || || Sbjct 2572701 CCACCACGAAGACGAAGGACCAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 2572760 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | ||||| || || || || || || || || || || | || |||||||||||||| Sbjct 2572761 AGGGTTCGACCGTCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCAGGAGGG 2572820 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || | || || || || || | || |||| || || Sbjct 2572821 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGATGACTCGACC 2572880 Query 140691 TCAAGTGTAACTGTCTTTCCGGT 140713 ||||| || | ||||| ||||| Sbjct 2572881 TCAAGGGTGATGGTCTTGCCGGT 2572903 >seq3 Length=7792947 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 6169718 CATACCACCACGAAGGCGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 6169777 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 6169778 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 6169837 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || ||||| | || || | || Sbjct 6169838 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 6169897 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 6169898 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 6169948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254283514818