Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20graminearum_20[genbank_20GCA_5F900044135.1_202016-08-03]
6 sequences; 38,047,942 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3 223 4e-53
seq4 147 2e-30
>seq3
Length=7792947
Score = 223 bits (246), Expect = 4e-53
Identities = 418/608 (69%), Gaps = 10/608 (2%)
Strand=Plus/Plus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|| ||| || | ||||||| ||||| | || ||| |||||||| |||||||
Sbjct 1386460 CCGCAGCATATGATCATGCGAGTCGCTGTTGGAATCTGGGGTGACGATATTGAGCGTGTC 1386519
Query 53240 CGTGAGACGTACGACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGT 53297
||||| ||| || | ||| ||| |||| ||| || || || | || || | |
Sbjct 1386520 TTGGAGACATACAACCTCATGT--CAAGCAAGTTCTTCACTCATGCAAGCCCCACTTTAT 1386577
Query 53298 TCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATG 53357
||||||| ||||| || |||||| | || |||||||| || | |||||||| |
Sbjct 1386578 TCAACGCCGGTACTCCACAGCCTCAGCTTTCATCATGCTTCCTTGTTGATATGAAGGAGG 1386637
Query 53358 ACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417
|| || || || |||||||| || |||||| |||||| || |||||| | | |
Sbjct 1386638 ACAGCATTGATGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTG 1386697
Query 53418 GTGGTATCGGTATCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475
||||||| || | || | |||| ||||||| | ||| | ||| || ||
Sbjct 1386698 GTGGTATTGGCTTGAACGCCCACCGAA--TCCGTGCCACTGGCTCTTACATCGCCGGTAC 1386755
Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|| || || | || ||||| || ||||| || || ||||||||||| || || ||
Sbjct 1386756 CAATGGTACTTCCAACGGTATCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTA 1386815
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| ||||||||||| ||||| || | |||||||||||||| || || |||||
Sbjct 1386816 CGTTGACCAGGGTGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAACCATGGCA 1386875
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
||||||| | | ||||| || || || || |||||| ||| | || ||| | |||
Sbjct 1386876 CGCCGACGTCTTCGAGTTCCTTGATCTCCGAAAGAATCACGGTAAGGAGGAGGTCCGCGC 1386935
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||||| |||||| ||||| || || || |||||| | || |||| |
Sbjct 1386936 TCGTGACCTGTTCTTAGCTCTTTGGATCCCTGATCTTTTCATGAAGCGTGTCGAGAGAAA 1386995
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTG 53774
|| || ||| || |||||||| ||||| ||||| |||| | | | || ||||||||
Sbjct 1386996 CGGCGAATGGACTCTCATGTGCCCTAACGAATGCCCTGGCCTTGCTGACTG-CTACGGTG 1387054
Query 53775 AGGAGTTT 53782
| || |||
Sbjct 1387055 ACGAATTT 1387062
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAGTCTGATTGACATGAGT 55786
|||||| | ||| ||| |||||||||||| | ||| | || || | | ||| |
Sbjct 1387991 TCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG-TGCAGATGGCT 1388049
Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846
||||| |||||||| | ||| || ||||| |||||||| ||||| |||| || | |||
Sbjct 1388050 GCTGACCGTGGTGCCTTCATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 1388109
Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906
| ||| |||| | | | |||||||| || |||||| || |||||||| ||
Sbjct 1388110 ACCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTGGC 1388169
Query 55907 ATGTACTATCTGCGGAC 55923
|||||||| || || ||
Sbjct 1388170 ATGTACTACCTCCGTAC 1388186
>seq4
Length=9395062
Score = 147 bits (162), Expect = 2e-30
Identities = 191/264 (72%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357
||| || |||||| ||||||||| || |||||||| ||||| ||||| || | |||
Sbjct 5289969 TAGTCGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACC 5289910
Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417
||| | |||||| || |||| | ||| | |||||| | |||||| ||||| ||||| |
Sbjct 5289909 GAAGTTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAG 5289850
Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477
| | ||| || ||| || | ||||| ||||| || |||||||| || | |||
Sbjct 5289849 GCCAATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACAC 5289790
Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537
|| || |||| | | | |||||| ||||| ||| ||| |||||| ||| || ||
Sbjct 5289789 ATAACCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTA 5289730
Query 117538 AATCACCTTGCGCTGACTTGGCTT 117561
|| ||||||||||||| |||||
Sbjct 5289729 GATGACCTTGCGCTGACCGGGCTT 5289706
Score = 120 bits (132), Expect = 3e-22
Identities = 206/299 (69%), Gaps = 0/299 (0%)
Strand=Plus/Minus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| ||||| |||| || | ||||| ||||| |||||||| || || | || ||
Sbjct 5289965 CGGGTGAAAGTGTAACGAGGACTGGCAGCATCAGAACCACCTGCAAGTCGAGAACCGAAG 5289906
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| |||| ||| || ||| ||||| |||||| | ||||||||| |||||||| |
Sbjct 5289905 TTTCCACTGGGTTCCAGGCAGTTGATGTTGTTCGAGCCCACGAAGTTCTGAGCAAGGCCA 5289846
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205
| ||| || || || | |||||||||||| || |||||||| || | | ||
Sbjct 5289845 ATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTCTGTTCGGACACATAA 5289786
Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265
|| ||||| | | |||||| |||| | ||| ||| |||||| || ||||| ||
Sbjct 5289785 CCTGCCAATTCAACGACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTAGATG 5289726
Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||||||||||| || || || ||||||| || ||||| || ||| || ||||
Sbjct 5289725 ACCTTGCGCTGACCGGGCTTGAATCCGTCCAGAACAGATGGAATAGATCGCATGTTGTC 5289667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215958958800
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