Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2635 181 1e-40 >seq2635 Length=144039 Score = 181 bits (200), Expect = 1e-40 Identities = 617/950 (65%), Gaps = 16/950 (2%) Strand=Plus/Minus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || || || || ||||| | || | ||| | || || |||||||| Sbjct 61194 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTGCA 61135 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 || ||| | ||| || || | || | ||| || ||||| ||| || ||||| Sbjct 61134 CAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 61075 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || ||||| || | ||||| ||| |||||| || | ||| || | ||| | Sbjct 61074 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAA- 61016 Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCT--TTCGTATAGAGTA--TAC 63182 | || ||||||| || || ||| | |||| | || ||| ||| | ||| Sbjct 61015 GCTTCTGAGCCTTGAT---AGTCTTGCGAC-CCTTGCCCTCCTTCTCATACTTTTCGTAC 60960 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 | |||||||| || || | | | | | | ||| || || | || |||||| Sbjct 60959 AGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATC 60900 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | | ||| || |||| | | || || |||||||| |||||||| |||||||| || Sbjct 60899 AGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCG 60840 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362 | || || || | | | ||||| || || |||||| ||||| |||||| Sbjct 60839 AGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAGGAAC 60780 Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422 | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||| Sbjct 60779 TCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTG 60720 Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || |||||||| | || | ||| ||||| || | || | | ||| |||| || ||| Sbjct 60719 CCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCG 60660 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTG 63540 || ||| |||| |||||||||| ||| ||| ||| | ||||| ||| | | || Sbjct 60659 TTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTC 60600 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | |||| || || || ||||| || ||||| | || || || | || || |||| Sbjct 60599 A--GACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGA 60542 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 |||| || || || || || |||| | || | || || |||| |||| | ||| Sbjct 60541 TGCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAG 60482 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 || || || || || | || ||||| || || ||||| |||| || | || | Sbjct 60481 GGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCAGGT 60422 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATT 63779 | || ||||| | || || ||||| || || | || || | |||||||| Sbjct 60421 TATATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATG 60363 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | |||||||||||| | || ||||| || || || || | | ||||||| ||| Sbjct 60362 ATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGCTCC 60303 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || || ||||| || | |||| || || || || || | ||| Sbjct 60302 AAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAAT 60253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629788274118000