Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3216 113 4e-20 seq186 107 2e-18 >seq3216 Length=359522 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| |||||||| || |||||||| ||||| | |||| ||| || Sbjct 237837 AACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTC 237896 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| |||||| |||||||| ||||| || ||||| || ||||| | Sbjct 237897 AAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC-T 237955 Query 139675 GATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | || | | || | ||||||| | ||| ||||| | ||| | |||| Sbjct 237956 GAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 238015 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||| || || ||||| || ||||| Sbjct 238016 TGCCGGTCAAGGTCTTGACGAAGATCTGCAT 238046 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 |||||||| || | || | ||| | ||| | || ||||| || || ||||| || ||| Sbjct 237079 TGGCCGCCGCGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCG 237138 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| ||||| ||||| |||||||| |||| |||||||||||||| || Sbjct 237139 CTCAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGG 237198 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| | || | || | | || | ||||| ||| ||| Sbjct 237199 GGGATACCCTCCTTGTC-CTGAATCTTACTCTTCACGTTGTCAATAGTGTCACTGGACTC 237257 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| ||| | || || ||||| | || || ||||| || |||||| Sbjct 237258 GACCTCAAGGGTGATGGTTTTTCCGGTGAGAGTCTTAACGAAAATCTGCATA 237309 >seq186 Length=137720 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || ||||||| |||| || | || |||||||| || || Sbjct 101086 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGCC 101028 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||| || || ||||| ||||| || ||||| || ||||| ||| || || Sbjct 101027 AGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 100968 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||||||||||| ||| | |||||| || || | || Sbjct 100967 GACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 100908 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 100907 CTTGACGAAAATCTGCAT 100890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496040902020000