Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2635 221 2e-52 seq524 127 3e-24 >seq2635 Length=144039 Score = 221 bits (244), Expect = 2e-52 Identities = 634/961 (66%), Gaps = 22/961 (2%) Strand=Plus/Minus Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 ||| || || || || || || ||||| | || | ||| | || ||||||||||| Sbjct 61194 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTGCA 61135 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 |||||| | ||||| || | || | ||| || ||||| ||| || ||||| Sbjct 61134 CAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 61075 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || || ||||| || | ||||| ||| |||||| || | ||| || | ||| | Sbjct 61074 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAA- 61016 Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TCGTATTGT--GTATA 79853 | || ||||||| || || |||| | ||| | ||| || || | | ||| | Sbjct 61015 GCTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTCATACTTTTCGTACA 60959 Query 79854 TAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 | | |||||||| || || | ||| | | ||||| || |||| || ||||| Sbjct 60958 GAGCC--TCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACAT 60901 Query 79914 CAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971 || | ||| || || | || ||| || || |||||||| |||||||| |||||||| Sbjct 60900 CAGTGTCCAGTCACCGT--TCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGG 60843 Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 || | || || || | || | |||||| || || |||||| ||||| ||| Sbjct 60842 GCGAGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAGG 60783 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091 ||| | | | |||||| ||||| || || | ||| ||||| | | | || ||||| ||| Sbjct 60782 AACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG 60723 Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151 || || |||||||| | || | ||| ||||| || | || | | ||| |||| || Sbjct 60722 TTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACG 60663 Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAA 80209 || ||||||||||| ||||| |||| ||| ||| ||| | ||||| ||| | | Sbjct 60662 CCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACG 60603 Query 80210 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 80269 || ||||| || || || ||||| || ||||| | || || || | ||||| | Sbjct 60602 TT--CAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGT 60545 Query 80270 AGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 80329 |||||||||| || || || || |||| | || | || || |||| |||| | Sbjct 60544 AGATGCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCT 60485 Query 80330 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 80389 || || || || || || | || ||||| || || ||||| |||| |||| | Sbjct 60484 GAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCA 60425 Query 80390 GATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGC 80448 | || || ||||| | || || ||||| || | || || || | |||||| Sbjct 60424 GGTTATATGTCTCCAAGACTCGCTCGATATCATCACCCCAG-ATACCAACAGACACACGC 60366 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 || | |||||||||||| | || || ||||| | || || | | ||| ||| Sbjct 60365 ATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGC 60306 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568 |||||||| || || ||||| || | |||| || || || || || | ||| | ||| Sbjct 60305 TCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCGGAG 60246 Query 80569 T 80569 | Sbjct 60245 T 60245 >seq524 Length=29470 Score = 127 bits (140), Expect = 3e-24 Identities = 357/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| |||||||| || | | || || |||||||| || || || |||||||| || || Sbjct 2727 GTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 2786 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 2787 ACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGC 2846 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCA-CTTTTGAG 50149 || |||||||| || | || || | || | | || || ||||| | || | Sbjct 2847 AGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 2905 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| |||||||||||| | ||||| || || || ||||| || ||||| ||| || Sbjct 2906 CCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 2965 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | || || | || || || || | ||| || | || || || |||| Sbjct 2966 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCAGAGTGGATGT 3025 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || ||||| || ||||||||||| | |||||||| ||||| || || || Sbjct 3026 TCTCCATCATGATCTGGAAGCCGTAGAAACAACGAGCCTCGGGGATCTGGACCTCGCCAC 3085 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 ||||| ||| | | || || || || || || ||| ||| || || || || | | Sbjct 3086 TGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAGGCAAGGA 3145 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446 || | || | || | || || | | || ||||| || | || ||| | Sbjct 3146 TGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCT 3205 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 3206 TGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 3265 Query 50507 AGAT 50510 |||| Sbjct 3266 AGAT 3269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718235355609000