Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq524 244 2e-59 seq2635 149 9e-31 seq1924 84.2 3e-11 >seq524 Length=29470 Score = 244 bits (270), Expect = 2e-59 Identities = 568/845 (67%), Gaps = 25/845 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| |||| ||||| ||||| | ||| ||| | ||||| Sbjct 3269 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 3210 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | || |||||| ||||| || | || Sbjct 3209 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 3150 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | |||||||| || | ||| ||||| || |||||||| || || ||||| || Sbjct 3149 CACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTTGAG-CG 3091 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 |||| | ||| | || || |||| |||| ||| ||||| ||||| ||||||| Sbjct 3090 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGTTTCTACGGCTTCCAGATCATGA 3032 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | |||||| | ||||| || | ||||| || ||||||| ||||| || || | Sbjct 3031 TGGAGAACATCCACTCTGAGACCTACTCCCTTCTCATTGACACCTACATCAAGGAGCCCG 2972 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | | ||| | ||||| ||||| || || || | || | || || || ||||| Sbjct 2971 CCCAGCGAACCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGAAGGCC 2913 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || || |||||| | || | | || || | ||| | | || || || Sbjct 2912 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCC 2853 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| || || ||||| |||||||| ||| ||||| | ||||| ||||||||| Sbjct 2852 TTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCAAG 2793 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || ||||||||||| ||||| | |||||| | || ||||| || ||||| Sbjct 2792 AAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGT 2733 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615 || ||| |||||||||| || || | ||| | | | | || | | || Sbjct 2732 CTCCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGGGTCGTGCC 2682 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 ||| | | | | || |||| | || |||||||| | || || || ||||| || Sbjct 2681 AGCAAGCAGATGATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTC 2622 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATA 125735 || || | || || | | | |||||||||| | || ||| |||| || Sbjct 2621 ACTGAGGCTCTCCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTATATT 2562 Query 125736 GAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACAACG 125790 ||||| || || |||||||| || |||| ||||| || ||| | ||||| | Sbjct 2561 GAGTTCGTCGCCGATCGTCTCCT-----TGTTGCTCTTGGCAACGAGAAGGTCTACAAGG 2507 Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 | | || ||||| || |||||| | ||| || || | || ||||||||||| |||| Sbjct 2506 CTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCG 2447 Query 125851 AGAAG 125855 ||||| Sbjct 2446 AGAAG 2442 >seq2635 Length=144039 Score = 149 bits (164), Expect = 9e-31 Identities = 308/449 (69%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 60712 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 60771 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | ||| Sbjct 60772 GTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGAC 60831 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 |||| || || ||| | || ||| | || |||||||| || || |||||| Sbjct 60832 CTGTTCCTCGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACGGTG-- 60889 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || || || |||| |||| || || ||| Sbjct 60890 -ACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGTGAGGAG 60948 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171 || ||||| |||| || ||| | |||||| | || |||| | || | || Sbjct 60949 TTCGAGGCTCTGTACGAAAAGTATGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGC 61007 Query 97172 ACGAGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| || ||| | ||||| | ||| ||||||| |||||||||| || | ||| Sbjct 61008 TC-AGAAGCTTTGGTATGCCATTCTTGA-GGCTCAGACTGAGACTGGAAACCCTTTCATG 61065 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| ||||||||| || | ||||||||| || Sbjct 61066 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGCACCATCCGAAGC 61125 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTA 97318 || || |||||||| |||||| | ||||| Sbjct 61126 TCTAACCTGTGCACTGAAATTATCGAGTA 61154 >seq1924 Length=146382 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| | ||||||||| | | ||||||||||||| || ||||||| | || ||||| Sbjct 37575 TTTCCTGTAAAAGATCATGGCACCTCGAGGACCTCTTAGGCTCTTGTGGCTAGTTGTGGT 37634 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA-A 127219 ||||| || || | ||||| ||||||||||| || | |||| |||| ||| | | Sbjct 37635 TACAATATCGGCGTAGGCGAAGGGACCAGGAATGACCTTTGCTGCAA-CAAGACCGGAGA 37693 Query 127220 TGTGTGCAATATCGGCCA 127237 | || ||||||||||||| Sbjct 37694 TATGGGCAATATCGGCCA 37711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741024694431000