Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3216 132 1e-25 >seq3216 Length=359522 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||| |||||||| || ||||| | || |||| ||||| Sbjct 237553 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCGTCC 237612 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || |||||||| || || | ||| ||||||||||| || || || || ||| Sbjct 237613 TCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 237672 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||||| || ||||| || | || ||| | || ||||| || || |||||| Sbjct 237673 TGGATCTTTGACTTGACATTGTCGATAGTGTCGGATGACTCAACCTCGAGAGTGATAGTC 237732 Query 104528 TTACCAGTAAGTGTTTTTACAAATAT 104553 || ||||| || || || || | ||| Sbjct 237733 TTGCCAGTGAGGGTCTTGACGACTAT 237758 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || ||||| || || | ||||| || || || || ||| Sbjct 237850 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 237909 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || || || || || || || || || ||||||||||| | || Sbjct 237910 GCAAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 237969 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || || ||||| || || || ||||| || || | || Sbjct 237970 ACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 238029 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 238030 TTGACGAAGATCTGCAT 238046 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || | ||| ||||| || || || ||| Sbjct 237112 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTACCA 237171 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | || |||||||| || || || || || ||||||||||| || Sbjct 237172 GCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTACTCTTC 237231 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || | || ||||| || || || || || || || || || Sbjct 237232 ACGTTGTCAATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTTTTTCCGGTGAGAGTC 237291 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 237292 TTAACGAAAATCTGCAT 237308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151343447712300