Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3216 127 2e-24 seq186 122 8e-23 seq524 95.1 1e-14 >seq3216 Length=359522 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | || || || | || | || |||||||| || |||||||| ||||| Sbjct 237081 GCCGCCGCGAAGTCGGAGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCT 237140 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || |||||||| || ||| |||| | ||| ||||| || || || Sbjct 237141 CAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGG 237200 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||| | | || | ||| || ||||||||| Sbjct 237201 GATACCCTCCTTGTCCTGAATCTTACTCTTCACGTTGTCAATAGTGTCACTGGACTCGAC 237260 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| ||||| ||||| || |||||||||||||| Sbjct 237261 CTCAAGGGTGATGGTTTTTCCGGTGAGAGTCTTAACGAAAATCTGCAT 237308 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| |||||||||||||| | |||||| |||||| ||||||||||| Sbjct 237850 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 237909 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| || || |||||||| || || || || || ||||| || || |||| Sbjct 237910 GCAAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 237969 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||| |||| ||||| | |||| ||| | ||| || ||||| | || Sbjct 237970 ACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 238029 Query 131218 TTTACGAAAATCTGCATGA 131236 || ||||| |||||||||| Sbjct 238030 TTGACGAAGATCTGCATGA 238048 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| || ||||| ||||||||||| ||| Sbjct 237538 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCG 237597 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || |||||||| || |||| | |||||||| || |||||| Sbjct 237598 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGG 237657 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||| |||| ||||| | Sbjct 237658 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATAGTGTCGGATGACTCAACC 237717 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| || | || || || || || || || |||| Sbjct 237718 TCGAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGA 237754 >seq186 Length=137720 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| |||||| Sbjct 101116 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 101057 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 101056 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 100997 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 100996 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 100937 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 100936 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 100890 >seq524 Length=29470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 338/520 (65%), Gaps = 19/520 (4%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC-AGCAGCACCGC 46142 || || ||| | || ||||| |||||||||| || |||||| | | || || | Sbjct 2936 ATTCCTTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCC 2877 Query 46143 GACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAG 46202 |||| ||| ||||| | || ||||| || ||| ||||| |||| || || Sbjct 2876 TCCTTT-GCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGC 2818 Query 46203 TTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 |||||| | ||||| | |||| || | || | |||||||||||||||| || || Sbjct 2817 CTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTC-TCATGCCCGGCCTGACCTTCTCCA 2759 Query 46262 ACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACA 46321 ||||||| || || || || ||||| || || || |||||||| || ||| || || Sbjct 2758 ACGAGCTCATCTCTCGTGATGAGGGTCTCCACACTGACTTTGCCTGCCTC--CT---CCA 2704 Query 46322 CTCGCGTGCACGACAA-GCTTGCGCCCG-----ACACCGTGCTGAGCATGTTCAAGGAGG 46375 ||| ||| ||| | | | ||| | | | | | | ||| ||| || | Sbjct 2703 CTC----TCACCTCAAGGGTCGTGCCAGCAAGCAGATGATCCAGGACATCATCACTGATG 2648 Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435 | || |||||||| ||||||| | || | || || ||| |||||| || ||||||| Sbjct 2647 CCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTCCCCTGTGCCCTTCTCGGCATGA 2588 Query 46436 ACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTC 46495 || | | ||| | || || ||||| || || || || || || || ||| Sbjct 2587 ACTCTGACCTCATGAAGCAGTATATTGAGTTCGTCGCCGATCGTCTCCTTGTTGCTCTTG 2528 Query 46496 ACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGG 46555 | | |||| | | || ||| || || || || ||| | ||||||||||| | Sbjct 2527 GCAACGAGAAGGTCTACAAGGCTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTG 2468 Query 46556 AGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| || || || ||||| ||||| || | ||| || Sbjct 2467 GTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTA 2428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471990821904000