Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3216 93.3 3e-14 seq186 87.8 1e-12 >seq3216 Length=359522 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || || ||||| || ||||||||||||| | ||| | ||||| Sbjct 237325 AGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCC 237384 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| ||||| ||| | || || |||||||| || ||| | ||||| ||||| Sbjct 237385 TCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCT 237444 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| ||||| |||||| | | | || ||| | ||| ||||| || ||||| Sbjct 237445 TGAATCTTGCT-CTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGT 237503 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || ||||| || || ||||| Sbjct 237504 CTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 237536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||| || ||| | || |||| || Sbjct 237106 TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGC 237165 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851 || || || | ||||| || || || || || | ||||| ||||| ||| || Sbjct 237166 TTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTA 237225 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 || |||||| | | | | |||||| | || ||| || | |||||||||||||||||| Sbjct 237226 CT-CTTCACGTTGTCAATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTTTTTCCGGT 237284 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || || || || ||||||||||| Sbjct 237285 GAGAGTCTTAACGAAAATCTGCAT 237308 >seq186 Length=137720 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||| || ||| | ||| Sbjct 101101 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 101042 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | || || ||||| ||||| || | |||||| ||||| Sbjct 101041 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 100982 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||| || | | | | |||||| | |||| || | |||||| || Sbjct 100981 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 100922 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || || || ||||| ||||||||||| ||| Sbjct 100921 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 100886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405069609637750