Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq524 131 3e-25 seq84 109 1e-18 seq11 109 1e-18 seq3342 98.7 2e-15 >seq524 Length=29470 Score = 131 bits (144), Expect = 3e-25 Identities = 384/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 2446 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTA 2505 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | | Sbjct 2506 GCCTTGTAGACCTTCTCGTTGCCAAGAGCAACAAGGAGACGATCGGCGACGAACTCAATA 2565 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| || | |||||| || | Sbjct 2566 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGGAGAGCCTCAGTGAGG 2625 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 2626 AACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATCATCTGCTTGCTGGCA 2685 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 2686 CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGGAGACCCTC 2738 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||||| ||||||||| | |||||| ||||| | ||||| ||| |||| Sbjct 2739 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAG 2798 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | ||||| || ||| | | |||||| ||| | | ||||| Sbjct 2799 CCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAGGCAAC 2858 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 2859 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 2918 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | || || || || || || | ||||| || | |||| ||| || Sbjct 2919 CTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGCTGGGCGGGCTC 2978 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| || || ||||| |||| || |||||| Sbjct 2979 CTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCAGAGTGGATG 3024 >seq84 Length=83255 Score = 109 bits (120), Expect = 1e-18 Identities = 177/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || ||||| ||||| | Sbjct 75337 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACCTTCTCTC 75396 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| |||||||| || ||| |||| ||| |||||||||| | | Sbjct 75397 TTGCCTACGGTGCCAAGATTCTTCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGC 75456 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| |||||||| || | || ||| ||| || ||||||||||| | Sbjct 75457 GTTACGGTCTTTGTGGTCCCAACGGTTCCGGAAAGTCCACCCTCATGCGCGCCATCAACA 75516 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | || || || ||||| ||| |||||| | ||| || | || |||||| Sbjct 75517 ACGAGCAGGTTGAGGGTTTCCCTAA-GCAGAGTGAGGTCAAGACTGTCTTCGTCGAGCAC 75575 Query 279555 GACATCGACTCC 279566 ||| |||||||| Sbjct 75576 GACCTCGACTCC 75587 Score = 96.9 bits (106), Expect = 7e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| ||||| |||||| ||||| |||| ||| || Sbjct 76768 CTCACTCTCGCATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTCGCCGCTT 76827 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | ||||| | ||||| || |||||||||||||||||||| ||||| Sbjct 76828 GCTCT-TGGCAGCGACCTCATCTTATCGTCCTTGACGAGCCTACCAACTATCTCGACCGT 76886 Query 280821 GA 280822 || Sbjct 76887 GA 76888 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||||| || || || ||||| || ||||||||||| ||||| || || Sbjct 76182 TCCCGTATTGCCGTCATCGGTCCTAACGGTGCTGGCAAGTCTACCCTGATCAACGTTCTC 76241 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 ||||| ||| | |||| |||| | | |||| ||||| || || || Sbjct 76242 ACTGGTGAGCTCATCCCCACCCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGCC 76301 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 ||| | |||||||||||| |||||||| ||||| || |||| ||||||| | | Sbjct 76302 TACATTAAGCAGCACGCTTTCGCTCACATCGATAACCATCTCGACAAGACTCCTTCCGAG 76361 Query 280341 TACATTCAGTGGCGCTATGCAAGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | | ||| |||||| ||| | |||| || Sbjct 76362 TACATCCAGTGGCGATTTCAGACTGGTGAGGATCGTGAGACCATGGACCG 76411 >seq11 Length=203972 Score = 109 bits (120), Expect = 1e-18 Identities = 201/295 (68%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 218516 CTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTC 218575 ||||||| ||| ||| || || ||||| ||| | |||| ||| || || | Sbjct 139188 CTGACTTTATCAACAGAGAACTTATTCTCTTCAGTATGGCTGATAACATGCGATCCATCC 139129 Query 218576 CCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGC 218635 | ||| |||||||| ||||||| ||||||||| || | | |||| |||||| Sbjct 139128 CGTCCGTACTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGA 139069 Query 218636 GGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTG 218695 | ||| |||| |||| | ||||||| | | || |||||||||| |||||| ||| Sbjct 139068 GAAACTTGGTCAAAGACAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCCGAACAGACTG 139009 Query 218696 GCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755 ||||||||||||||| ||| ||| ||| | || | ||| | || ||| ||| | Sbjct 139008 CCTACCATCACGGTGAACAGTCTCTCCAGCAGACTATCATTGGCCTAGCCCAGAACTTCG 138949 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 | || |||||||| |||| ||| |||| || | || |||||||| || Sbjct 138948 TCGGTTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 138894 >seq3342 Length=342005 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 ||| | |||| || || || ||||| || ||||| || || ||||| |||| || |||| Sbjct 248021 TTGCTATCATCGGCCCTAACGGTGCTGGCAAGTCCACTCTTATCAAGCTCCTTACCGGCG 248080 Query 280228 AGAC---CCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284 |||| || |||| | | ||| |||||| |||||| | || || | |||| Sbjct 248081 AGACTATCCCTACCACCGGAAAG---GTTGAGAAGCACCCCAACCTCCGTATTGGTTACA 248137 Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344 || ||||||||||| | ||| | |||| ||| |||| | ||| |||||||| ||| Sbjct 248138 TCAAGCAGCACGCTTTGGAGCACGTTGAGATGCACTTGGAGAAGACCCCTAACCAGTACC 248197 Query 280345 TTCAGTGGCGCTAT 280358 |||||||||| ||| Sbjct 248198 TTCAGTGGCGTTAT 248211 Score = 84.2 bits (92), Expect = 4e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 247545 AGTTGGTTCCCTTTCTGGAGGTTGGAAGATGAAGCTGGCACTGGCCCGAGCTATGCTCCA 247604 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 |||||| ||||| || || || || || || || ||||| | || ||||| | || Sbjct 247605 GCGTGCTGATGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 247664 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | || | || | ||||| |||||| Sbjct 247665 ATGGCTTGAGAACTACCT--CAAGTCTCATCCCGATATCACTAGTTTGATTGTTTCTCAC 247722 Query 279873 GACTCTGGCTTCCTAGA 279889 |||||||| || || || Sbjct 247723 GACTCTGGATTTCTGGA 247739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027787744882725