Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq524 398 1e-105 seq2635 358 1e-93 >seq524 Length=29470 Score = 398 bits (440), Expect = 1e-105 Identities = 611/858 (71%), Gaps = 24/858 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||| || Sbjct 3269 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 3210 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCA 42414 ||||||| || |||| | || ||| ||| | || |||| ||| || Sbjct 3209 TCCAAGGATCTCCACGACTGGAA--CAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCT 3152 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 |||| || ||||||||||| |||||||| || || ||||| |||||||| | Sbjct 3151 CTCACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTTGAGC 3092 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||| ||||| ||| | ||||| || || ||||||||||||||||| | Sbjct 3091 GATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGATCATGA 3032 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATC 42591 | |||||| | ||||||||| ||| || || |||| |||| |||||| ||| | Sbjct 3031 TGGAGAACATCCACTCTGAGACCTACTCC---CTTCTCATTGACACCTACATCAAGGAGC 2975 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 ||| | |||| | | || ||||| ||||| ||||| || || |||||| ||||||| Sbjct 2974 CCGCCCAGCGAACCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGAAGG 2915 Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAG 42711 | |||||||| || |||||| || | ||| | | || | | || | || || | Sbjct 2914 CCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 2855 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 |||| | || || ||||| ||||||||| || ||||| ||||| ||||||||||||| Sbjct 2854 CCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCA 2795 Query 42772 AGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || ||| || |||||||| || |||||||| ||||| |||||| | || ||| Sbjct 2794 AGAAGCGTGGTCTC-ATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAG 2736 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTC 42889 || || || | ||||||||||||||||| ||| |||||| ||| | ||| | Sbjct 2735 GGTCTCCACACTGACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC 2679 Query 42890 GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||| || | ||| || ||||||||| || ||||| || ||| ||||||||||||| Sbjct 2678 -AAGCAGATGATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCAC 2620 Query 42950 GCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 || | || ||| ||| |||| ||||||||||| ||||||||| |||| || Sbjct 2619 TGAGGCTCTCCCCTGTG-CCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTATATTG 2561 Query 43009 AGTACGTCGCCGACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCG 43067 ||| ||||||||| | ||||| ||| | ||| || | ||||||| | | Sbjct 2560 AGTTCGTCGCCGATCGTCTCCTTGTTGCTCTTGGCAACGAGAAG-GTCTACAAGGCTACC 2502 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 |||||||||||| |||||||||||||| | | |||||||||||||| ||||||||| Sbjct 2501 AACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAG 2442 Query 43128 CGCGTCGCCGACTACCAG 43145 || || |||||||||||| Sbjct 2441 CGTGTTGCCGACTACCAG 2424 >seq2635 Length=144039 Score = 358 bits (396), Expect = 1e-93 Identities = 904/1358 (67%), Gaps = 41/1358 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || |||||||||| |||| | || || Sbjct 61767 GTTGACAACCTGGAACTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 61708 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 61707 CTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAG 61648 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | ||||| ||| || | | || |||| |||| | Sbjct 61647 GAGCAGACTGTTACGGATACCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 61597 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||| ||||| || | |||| Sbjct 61596 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAG 61538 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | |||| ||||| | |||| | ||||||||| || || |||||||| || | Sbjct 61537 AGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTGCACGGAGG 61478 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| ||||||||||||||||||| |||||| | || || |||| | Sbjct 61477 CAGT-GAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCG 61419 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| |||| || | ||| | || || || ||||| || |||| Sbjct 61418 GGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGA 61359 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||| ||| ||| ||||| | || | || |||| || ||||| ||| | Sbjct 61358 CCAATGGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCGGG-ACAGGGTAGTGGTTCAC 61300 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625 |||||| | |||||| |||||||| | | || | ||| ||| ||| || | || | Sbjct 61299 GTCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTCGTGCAACTTCTTGA 61241 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||||||| | ||| || ||| | || ||| | || | || || | Sbjct 61240 AGTCGTA---GCAGGCCTCATCGTAGTTGATGA-----AGGAAGGC----AGAGCCAGAG 61193 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| ||||||||||| || ||||| || | | |||| || ||| || ||||| | Sbjct 61192 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTGCACA 61133 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 ||||| || ||||||||| |||| || || ||| |||| ||||||||| |||| Sbjct 61132 GGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCT 61073 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || || ||||| ||| || | || | | | ||| || | Sbjct 61072 TGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAGCT 61013 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||||| ||| ||||| |||||||||| ||| || |||||| |||| Sbjct 61012 TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCATACTTTTCGTACAGAGCCT 60953 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| || || ||| | ||||| |||||| |||||||| || ||| Sbjct 60952 CGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCC 60893 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || ||| | | || | || ||| || || || |||||||| ||||| |||| | Sbjct 60892 AGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCGAGGAACA 60833 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | || | ||| || || |||||| | || || | || || |||| Sbjct 60832 GGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGA 60773 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || |||||| ||||| | ||||| || | || ||||| ||||||||||| |||| Sbjct 60772 CATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCT 60713 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 | || | | | ||||| |||||||| || || |||| || | |||||| Sbjct 60712 GATCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGTTG 60657 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279 || |||||||| || |||||||| ||| | | | | | | ||| | | || Sbjct 60656 GATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGC--ACGTTCA 60599 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || ||||||||| | ||| ||| |||||| || || |||| Sbjct 60598 GACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATGC 60539 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| || ||||| |||||| | | || ||||| || |||| ||||||| ||| Sbjct 60538 CCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGG 60479 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | | | |||||| || ||||| ||| || |||||| Sbjct 60478 TACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAG 60441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944295229206000