Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq524 196 6e-45 seq2635 143 3e-29 >seq524 Length=29470 Score = 196 bits (216), Expect = 6e-45 Identities = 539/817 (66%), Gaps = 23/817 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 2427 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 2486 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || | | | |||| || | | ||| Sbjct 2487 GAAGTCGAAGGGGTTGGTAGCCTTGTAGACCTTCTCGTTGCCAAGAGCAACA-----AGG 2541 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| ||||||| |||| ||| ||||||||||| |||| ||| Sbjct 2542 AGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 2601 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| ||||| || || || |||| ||| ||||||| || || || | |||| Sbjct 2602 GCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATG 2661 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | || | || ||| || ||| Sbjct 2662 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAG-GCA 2718 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || |||||||||||| ||||| |||||||| || || |||||| ||| || ||| Sbjct 2719 AAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGC 2778 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | ||| | || ||||||||| ||| Sbjct 2779 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCC 2838 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 || ||| ||||| |||| ||||||| |||||||||| | ||| | | ||| Sbjct 2839 TCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCAT 2898 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762 || ||||| | ||||| || ||| || || | ||||| || || | ||||| Sbjct 2899 CGGATGGCCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGG 2958 Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG 127822 | | | | || || |||||||| | || ||||| || || || || | Sbjct 2959 TAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCAGAG 3018 Query 127823 TGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 127881 |||| | | ||| || | ||| | |||||||| | || || ||| ||||| || Sbjct 3019 TGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAACAACGAGCCTCGGGGATCTGGAC 3077 Query 127882 CTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAA 127940 ||| | | ||| | | | || ||||| ||||| ||||| || |||| || | Sbjct 3078 CTC-GCCACTGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGA 3136 Query 127941 ACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGT 127997 | || ||||| | | ||| ||| |||| | ||| || | |||||||||| Sbjct 3137 AGGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGT 3196 Query 127998 CGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||||||| |||||||| | |||||| |||||||| Sbjct 3197 GGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 3233 >seq2635 Length=144039 Score = 143 bits (158), Expect = 3e-29 Identities = 1089/1726 (63%), Gaps = 57/1726 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 62104 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTGCGAAGGTAGTACATGCCGGTCTTGAGAC 62045 Query 115586 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 | |||||||| | | || | ||||| || | |||| | || || | |||| Sbjct 62044 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 61986 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||||| ||||| ||||| |||||| || || || || ||||| | || Sbjct 61985 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGGTCAGCGGCCATCTGAACG 61926 Query 115705 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 115764 || | | || ||||| ||||| | || || ||| | ||| | ||||| Sbjct 61925 ACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGAGCCTTGACATCGGCAGGGATG 61866 Query 115765 TCCACGATATTTTGGATAGAGCCAC---CTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 | || || || || || ||| | || ||| || | | ||||||| | | Sbjct 61865 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCG 61809 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAACAAA 115877 ||||| ||||| || | || |||| | | ||| | |||||||| || Sbjct 61808 GACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGG----TTGACAACCTGGAA 61753 Query 115878 CTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATT 115937 |||||| |||||| |||| | | |||||||||| ||||| ||||| |||||||| || Sbjct 61752 CTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTT 61693 Query 115938 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| |||| || || | || ||| || ||||| || || | ||| || ||||| || Sbjct 61692 GTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACG 61633 Query 115998 GAGACCCACCCCCCTAATGCGTTC-CTTGAGG-GCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 || ||| | | | | | | || || | | |||||||| || | | | Sbjct 61632 GATACCGTGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGC 61575 Query 116056 TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 116115 | | | |||||| || |||||||||||||| | || || || || |||| || || Sbjct 61574 TTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTG 61515 Query 116116 TCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || || ||||| ||| |||| | ||||| || |||||| ||||| || Sbjct 61514 GAGTAGGGACCCTCCTCCTTGGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAG 61458 Query 116173 ATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 || ||||| || || | || | | |||||| || || || | | || Sbjct 61457 ATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG- 61399 Query 116233 CACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 || | || || |||| || || || || |||||||| ||||| || || || | ||| Sbjct 61398 CAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCGCAT 61339 Query 116292 ATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 || || ||||| |||| || || || ||| ||||| | | | || || Sbjct 61338 GTTGCTGTTGCGAGC---CTCCGGGACAGGGTAGTGGTTCACGTCGATGATCTTGTTCAG 61282 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC-T 116407 || | ||||||| ||| || || | ||| | | | || | | | | || | Sbjct 61281 GTTGCGAATAACAACCTGACTGACCTCGTGCAACTTCTTGAAGTCGTAGCAG-GCCTCAT 61223 Query 116408 CTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 116467 | | |||| | ||| || || | || || || || || |||| | ||| || Sbjct 61222 CGTAGTTGATGAAGGAAGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 61163 Query 116468 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 || ||||| |||||||| || |||| || || || |||||||| | ||||| Sbjct 61162 GGGCACAATACTCGATAATTTCAGTGCACAGGTTAGAGCTTCGGATGGTGCCGAGGTTCT 61103 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 |||| || ||| ||| || ||||||||||||||||| | || | || ||||| | Sbjct 61102 TTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAG 61043 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTC 116644 | || | || ||||| || | ||| | | || | | || | | || | ||| || Sbjct 61042 TCTGAGCCTCAAGAATGGCATACCAAAGCTTCTGAGCCTTG-ATAGTCTTGCG-ACCCTT 60985 Query 116645 GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAG 116703 | ||||||| ||| |||||| ||| || ||||| ||||| ||| || ||| || | | Sbjct 60984 G-CCCTCCTTCTCATACTTTTCGTACAGAGCCTCGAACTCCTCA-CCGTAGCAGTCGGCG 60927 Query 116704 AGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 116763 || || || || | || || | || | ||| | ||| || ||||| |||||| Sbjct 60926 AGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTC 60867 Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823 || || || || |||||||| || || ||| || || || || | || || | Sbjct 60866 ATAAAAAGATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCTTTA 60807 Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883 || || || || | || | || || | || ||| | |||||| || || ||||| Sbjct 60806 CCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAG 60747 Query 116884 ACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTT 116939 | || | | ||| | || | | ||| |||| | ||||| | || || ||| Sbjct 60746 ATGGCAAAAGCACCGGGTCGCTTGTTG-CCACCCTGATCGACATAGCGAGCAGTGTTGTT 60688 Query 116940 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGA 116997 || || |||||||| |||| | || | ||| || || || || ||| || || Sbjct 60687 GAAGACACGAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGA 60628 Query 116998 GACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 117057 | | | || | || | ||| | || || ||||||||| || ||| ||| ||||| Sbjct 60627 GCC--AGTAGCACGGATACGGTGCACGTTCAGACCAATACCTCCAGCCATCTTGGAGATC 60570 Query 117058 TGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 117117 || || | ||||| | ||||||| || || || ||| |||| | | | Sbjct 60569 ATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCAACC 60510 Query 117118 AGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 117177 | |||||| |||| ||| ||| || ||||||||||||||||| || || | || Sbjct 60509 AAGAAGCAAGATGACAATTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCA 60450 Query 117178 TGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGAC 117221 || || | | | ||| ||||||| | || ||||||||||| Sbjct 60449 TG--TGTAAAGAATTTGCTGGACATCAGGTTATATGTCTCCAAGAC 60406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613478633571000