Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2635 235 6e-57 seq571 89.7 6e-13 >seq2635 Length=144039 Score = 235 bits (260), Expect = 6e-57 Identities = 1088/1702 (64%), Gaps = 61/1702 (4%) Strand=Plus/Minus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TG 109457 |||| | |||||| || ||||| || || ||||||||| |||||| || | || | || Sbjct 62081 GCCTGTGTGCGAAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCA-GCCTGCAAAGTG 62023 Query 109458 CATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTG 109517 ||| | || ||| | || || || ||| | ||||| ||||| ||||| Sbjct 62022 CATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTG 61963 Query 109518 ATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCT----AATTT 109573 ||| ||||| ||| || ||||| ||||| | | || | | ||| ||| | Sbjct 61962 ATCAATGAAGGCACCTCGGTCAGCGGCCATCTGAACGA----CCTGGCGCTGAGAAATCT 61907 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| |||||||| |||| | ||||| ||| | || |||| ||||| ||||| | Sbjct 61906 CCCAAACAGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGG 61847 Query 109634 AGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTT 109690 | ||| |||| | | || | | |||||| | | ||||| ||||| | | | Sbjct 61846 AACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGT 61793 Query 109691 TGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTC 109747 || | ||| || || | ||||| || || |||||||| || |||| Sbjct 61792 CGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGGACACGTC 61733 Query 109748 GGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAG 109807 | |||||||||| | |||||||| ||||| ||||| |||||||| || || || | | Sbjct 61732 GCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAGG 61673 Query 109808 TGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCC 109867 | || || ||||| ||||| | ||| |||||||| |||| ||| | ||||| || Sbjct 61672 TACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATACCGTGTGTCTTGACTT 61613 Query 109868 GCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATAT 109927 ||| || | | ||||| || | | || | || | | |||||| | Sbjct 61612 CCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATGT 61559 Query 109928 CTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAA 109987 | || || | |||||||| || ||||| |||||||| | ||| | ||||| Sbjct 61558 CGAACTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCT 61499 Query 109988 CCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGA 110046 ||| ||||| || | | | || | | || || || || || || ||||| || || || Sbjct 61498 CCTTGGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGC 61440 Query 110047 GCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACAC 110102 || |||| |||| ||| | |||||||| | | || || || || | Sbjct 61439 ---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCAAGGAAAGC 61384 Query 110103 ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGC 110162 ||| || || ||||||||||||||||||||||| || || |||||| | ||||| Sbjct 61383 ATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGAGC 61324 Query 110163 AGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTT 110222 || ||||| ||| |||||||| | || || || | ||| || Sbjct 61323 CTCCGGGACAGGGTAGTGGTTCACGTCGATGATCTTGTTCAGGTTGCGAATAACAACCTG 61264 Query 110223 CGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGG 110281 ||| || || | || | | | ||| | | | || | || |||| | | Sbjct 61263 ACTGACCTCGTGCAACTTCTTGAAGTCGTA-GCAGGCCTCATCGTAGTTGATGAAGGAAG 61205 Query 110282 GGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAA 110341 | ||||| | ||| ||||| ||||| |||| |||||| | | || || | || Sbjct 61204 GCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAA 61145 Query 110342 TTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401 |||| || |||| ||| || || ||| || | |||||| || || ||| || Sbjct 61144 TTTCAGTGCACAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGT 61085 Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461 |||| |||||||| ||||||||| | ||| | ||||| || ||||| | || ||||||| Sbjct 61084 TGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGG 61025 Query 110462 CCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACT 110518 | | ||| | | || | | | | | ||| |||| | | || |||| ||| |||| Sbjct 61024 CATACCAAAGCTTCTGAGCCTTG-ATAGTCTTGCG--ACCCTTGCCCTCCTTCTCATACT 60968 Query 110519 TGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGG 110578 | ||||| |||| || |||| ||||| || | || || || || || Sbjct 60967 TTTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGG 60908 Query 110579 GACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCC 110638 | || | || | ||| | || || ||||| | |||||| || || ||||| |||| Sbjct 60907 GGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCC 60848 Query 110639 ACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 | | || ||| ||||||||| ||| |||| || | ||| ||||| || || | Sbjct 60847 AAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGAT 60788 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT------GGATC 110752 | | || || | || ||| |||||||| || ||||| |||| || | || || Sbjct 60787 CAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTC 60728 Query 110753 CCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812 ||| | |||| || | |||||||| || ||| |||||||| | ||||||| Sbjct 60727 GCTTGTTGCCACCC---TGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAG 60671 Query 110813 GAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGT 110872 ||| || || | |||| ||| || ||||| || ||| | | ||||| || Sbjct 60670 GAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATAC 60611 Query 110873 CGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGT 110931 ||| | | || ||||||||| || ||| ||| || ||||| ||| |||| Sbjct 60610 GGTGCACGTTCAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGA 60552 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 ||| | || || || ||||| || |||| | ||| | |||||||| |||| Sbjct 60551 GTATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAAT 60492 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG- 111050 || || |||| || || || ||||||||||| || | ||||| || | ||| ||| Sbjct 60491 TGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATG--TGTAAAGAATTTGC 60434 Query 111051 -GGACATCTTGTTGTATGTGTC 111071 ||||||| ||| ||||| || Sbjct 60433 TGGACATCAGGTTATATGTCTC 60412 >seq571 Length=15548 Score = 89.7 bits (98), Expect = 6e-13 Identities = 218/326 (67%), Gaps = 16/326 (5%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 |||||| ||||| || ||||||| |||||| | || ||| |||||||||||| Sbjct 4732 GAAACCATCCATCTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 4790 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA---------GCGTCAATCTCATCGATGAA 11702 || | | || ||| || || || | || ||||||||||| || ||||| Sbjct 4791 CAAATCCCCGGCC--ACTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCGTCAATGAA 4848 Query 11703 TACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCC 11762 | ||| || || ||| |||| | | |||| || || | ||||| | || Sbjct 4849 GATGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAGGTCTCTCACACGTGAAGGGCC 4908 Query 11763 AACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTA 11820 ||||| || ||||| |||||||| | | | || | ||||||| |||||| || Sbjct 4909 GACACCGACAAACATTTCAACGAATTCAGAACCGCTCA-CACTGAA-GAAGGGTACTCCT 4966 Query 11821 GACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGA 11880 ||||| || || |||| || || | |||||||| |||||||| | |||||| | Sbjct 4967 GACTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCAGTACCAGGAGGACCAGCTAAG 5026 Query 11881 AGGGCGCCACGGGGGATCTTGGCACC 11906 | || || || |||||||||||||| Sbjct 5027 ATAGCACCTCGAGGGATCTTGGCACC 5052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588948575805000