Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq36 100 2e-15 seq3216 87.8 1e-11 >seq36 Length=122584 Score = 100 bits (110), Expect = 2e-15 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | ||||||||||| || ||||| ||||| ||| || || || || |||||| | Sbjct 9099 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTCGAAATTCTC 9158 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 | ||| ||||| |||||| ||| ||||| ||||| || | ||||| ||| ||| | | Sbjct 9159 GTCAACGATCAGGGTAACCGAATCACTCCCTCTTACGTCGCCTTCACCGAAGATGAGCGT 9218 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTT 550178 || ||||| || || || || | || || | | ||| || || || ||||||| Sbjct 9219 TTGGTTGGAGACGCCGCCAAGAACCAGGCTGCCGCTAACCCCACGAACACTATTT 9273 >seq3216 Length=359522 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || |||||||||||| ||| || ||| ||||| || || || |||| Sbjct 237546 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCG 237605 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || |||||||| || || ||||| || || | |||||||||||||| || || || Sbjct 237606 GCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATGCCCTC 237665 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAG 563434 || || || || ||| || || || || || || | ||| | | ||||||| Sbjct 237666 CTTGTCCTGGATCTTTGACTTGACATTGTCGATAGTGTC-GGATGACTCAACCTCGAGAG 237724 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 | | ||| || ||||| || || || |||| Sbjct 237725 TGATAGTCTTGCCAGTGAGGGTCTTGACGA 237754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029099005200250