Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3216 123 2e-22 >seq3216 Length=359522 Score = 123 bits (136), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || | || || || | ||||| Sbjct 237315 ACGAAGACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGT 237374 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || ||||||||||| |||||||| || || || |||||||| |||||||| || Sbjct 237375 TCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCGGGAGGAATACC 237434 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||||| || ||| ||||| ||||| | || | | ||| | Sbjct 237435 CTCCTTGTCTTGAATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 237493 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || ||||| ||||| ||||| ||||| Sbjct 237494 GAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 237533 Score = 118 bits (130), Expect = 7e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| ||||| || ||||||||||| |||||||| || || || ||||| Sbjct 237153 ATCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTT 237212 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| |||||||| || || |||||||| ||| || |||||||| || Sbjct 237213 GTCCTGAATCTTACTCTTCACGTTGTCAATAGTGTCACTGGACTCGACCTCAAGGGTGAT 237272 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||||||||||||||||||||| || Sbjct 237273 GGTTTTTCCGGTGAGAGTCTTAACGAAAATCTG 237305 Score = 116 bits (128), Expect = 2e-20 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| ||| ||| || || || || || || || || Sbjct 237543 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGT 237602 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || ||||||||||| |||||||| || || || || ||||||||||| || || Sbjct 237603 TCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATGCC 237662 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || |||||| |||||| || ||||| || | || | || || | Sbjct 237663 CTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATAGTGTCGGATGACTCAA-CCTCGA 237721 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 | || ||||| || || ||||| ||||| |||| Sbjct 237722 GAGTGATAGTCTTGCCAGTGAGGGTCTTGACGA 237754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268019416676300