Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2635 259 5e-64 seq186 145 7e-30 seq3216 120 3e-22 seq1635 104 2e-17 seq524 102 8e-17 >seq2635 Length=144039 Score = 259 bits (286), Expect = 5e-64 Identities = 1011/1568 (64%), Gaps = 45/1568 (3%) Strand=Plus/Minus Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||| ||||| | || ||| | | || || ||||| ||||| || ||||| || || Sbjct 61793 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGGACACGT 61734 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 ||| | || | |||| || | || || || ||||||||||||||| |||||| | | Sbjct 61733 CGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAG 61674 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 || | || || ||||| || | ||||| ||| || | |||| | | | || Sbjct 61673 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATACCGTG-TGTCTTGAC 61615 Query 148413 TTGCGCT-TCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 || | || |||| | ||||||||||||| || || | ||||||||||||||| | Sbjct 61614 TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTTCCACATGTCGAA 61555 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||| || || || ||||| ||||| | | | | ||| || || | | || Sbjct 61554 CTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTT 61495 Query 148532 CGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | ||| | || ||| || ||| ||| || |||||| || ||| ||| Sbjct 61494 GGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGT 61436 Query 148591 TGAGC---AGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 ||||| | ||| || | | ||| | ||||| ||||| | || || || | Sbjct 61435 TGAGCTCACGAGCC-TCGGGTGAC--TCGAAGGGCATGCGCAGAGCAAGGAAAGCATCAG 61379 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 |||||||||| || || | |||||||| ||||| |||||| | ||| || | Sbjct 61378 CAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCG 61319 Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || || |||||||| |||||||||||||| || ||||| | || |||| | | Sbjct 61318 GGACAGGGTAGTGGTTCACGTCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGA 61259 Query 148768 TTCTGCGCAGCAATTCAAAATCGTACTTG---TCATC-TA--CGATGCATCGGTTCACGG 148821 | ||| | | || ||||| | ||||| || |||| | || | Sbjct 61258 CCTCGTGCAACTTCTTGAAGTCGTAGCAGGCCTCATCGTAGTTGATGAAGGAAGGCAGAG 61199 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 | | |||||| || ||||| || || ||| || ||||| | ||||| | || || | Sbjct 61198 CCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAG 61139 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 |||||| || || | ||| ||| | ||||||||| |||||||||| |||||| | Sbjct 61138 TGCACAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGG 61079 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACC 148998 | |||||||| |||||| | || ||||| || ||| | || | ||| ||| Sbjct 61078 CATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACC 61019 Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGA------CCCTCCTGCTCGTA-- 149050 | || | ||| || |||| | || | |||| ||||||| ||| || Sbjct 61018 AA---AGCTTCTGAGC-----CTTGATAGTC-TTGCGACCCTTGCCCTCCTTCTCATACT 60968 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 | ||| | ||| ||||||| |||| |||||||| ||| |||| || ||||||| || Sbjct 60967 TTTCGTACAGAGC--CTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTT 60910 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 |||||||| || | ||| | |||| | | || ||||||||||| ||||| || | Sbjct 60909 GGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGAT 60850 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230 ||| || ||| | ||||| || || | || || || ||| || || Sbjct 60849 CCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAG 60790 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 | || | ||| | || | |||||| ||||| | ||| | || | || || Sbjct 60789 ATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 60730 Query 149291 GCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 ||| ||||| ||||| ||||| | ||| | ||||||| || || |||| |||||| Sbjct 60729 TCGCTTGTTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGG 60670 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTT 149407 ||| ||| ||| || ||||| ||| | ||| ||| || || | Sbjct 60669 AACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACG 60610 Query 149408 GTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCG 149466 ||||||||| | || || || || ||| | ||| ||||| || ||| ||| | Sbjct 60609 GTGCACGTTCAGACCAATACCTCCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGAG 60551 Query 149467 TCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTT 149526 | |||||||||||| || |||||| |||||| | || ||||| || ||| || Sbjct 60550 TATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATT 60491 Query 149527 GCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT-CTGG 149585 | || | | || || || ||| | ||||| ||| |||||||| |||| |||| Sbjct 60490 GGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGG 60431 Query 149586 CTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCG 149645 ||||| | || | ||| | || || || || ||||| || ||| || | | Sbjct 60430 -ACATCAGGTTATATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGAC 60372 Query 149646 ACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG 149705 || ||||| | ||| ||||| || ||||| | | || |||| ||||| | |||| Sbjct 60371 ACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAG 60312 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATG 149765 || | |||||| |||||||||| | ||| | || |||||| | | | ||||| Sbjct 60311 GATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATG 60252 Query 149766 GCGGCGTC 149773 |||| ||| Sbjct 60251 GCGGAGTC 60244 >seq186 Length=137720 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 101087 GGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGC 101029 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||||||||| |||||||| |||||||| |||||| || Sbjct 101028 CAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 100969 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 100968 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 100909 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 100908 TCTTGACGAAAATCTGCAT 100890 >seq3216 Length=359522 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| | || || |||||||| || Sbjct 237112 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA-TCTTCCAGCTGCTTACC 237170 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || ||||| || || ||||| || |||||||| ||||| ||| Sbjct 237171 AGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTACTCTT 237230 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| ||| ||| || || | ||||| |||||| ||||| ||||| Sbjct 237231 CACGTTGTCAATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTTTTTCCGGTGAGAGT 237290 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 237291 CTTAACGAAAATCTGCAT 237308 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| | ||| |||||| ||||||||||| Sbjct 237850 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 237909 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||||| || ||||| |||||||| ||||| |||| Sbjct 237910 GCAAAGATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 237969 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | ||| || |||| ||||| ||| |||||||||| || Sbjct 237970 ACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 238029 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 238030 TTGACGAAGATCTGCATG 238047 Score = 100 bits (110), Expect = 3e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514 ||| | ||| || || ||||| || ||||| ||| | | || || || ||||| || Sbjct 237561 ATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCG--TCCTCAAGT 237618 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || || |||||||| || ||||||||||| |||||||| |||| Sbjct 237619 TGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATC 237678 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | ||||||| | ||| || |||| |||| || ||||| Sbjct 237679 TTTGACTTGACATTGTCGATAGTGTCGGATGACTCAACCTCGAGAGTGATAGTCTTGCCA 237738 Query 133635 GTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 237739 GTGAGGGTCTTGACGA 237754 >seq1635 Length=55299 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || || ||||| ||||| || || ||||| |||||| Sbjct 42602 TCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTG 42661 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | || ||| || |||| ||||| | Sbjct 42662 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 42721 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 42722 GTCTTGCCCGTCAGGGTCTTCACGAAA 42748 >seq524 Length=29470 Score = 102 bits (112), Expect = 8e-17 Identities = 340/523 (65%), Gaps = 17/523 (3%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||| | || || ||||| || ||||| || ||||| | | || ||||| | Sbjct 2424 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 2483 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | || || || ||| | ||| | || || || Sbjct 2484 CATGAAGTCGAAGGGGTTGGTAGCCTTGTAGACCTTCTCGTTGCCAAGAGCAACAAGGAG 2543 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 || || || || |||||||| |||| |||| | | ||||||||| || || | Sbjct 2544 ACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAGTTCATGCCGAG-AAGGG 2602 Query 120531 CACCGGCAAC-GCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 ||| || | ||| |||| ||||||| ||||||| || || || ||| ||| Sbjct 2603 CACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATGT 2662 Query 120590 CGAGCATAGTGTGGCCG--GGCAT----CTTGTGTTCGATGCGCGTTCGGTAGTACAGGC 120643 | | || | || | |||| |||| | | | | || | || | ||| Sbjct 2663 CCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGT----GAGAGT---GGAGGA--GGC 2713 Query 120644 ACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGC 120703 | |||||||| ||||| || ||||| || || || || ||||||||| || ||||||| Sbjct 2714 AGGCAAAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGC 2773 Query 120704 CGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACA 120763 ||||||||| || | |||||| |||| || | ||||||| || ||||| | Sbjct 2774 CGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGA 2833 Query 120764 CGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGA 120823 ||||| || || ||||| || | |||| ||| || | | ||| | || Sbjct 2834 TACCCTCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGA 2893 Query 120824 TCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 |||| |||||||| |||||||| || || | ||| || || Sbjct 2894 TCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAAGGAAT 2936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483398290719000