Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq524 196 7e-44 seq2635 114 2e-19 >seq524 Length=29470 Score = 196 bits (216), Expect = 7e-44 Identities = 360/512 (70%), Gaps = 22/512 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| ||||||||| | || | Sbjct 3270 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATC 3212 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| ||| ||| | ||| |||| ||| Sbjct 3211 TCTCCAAGGATCTCCACG----ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTC 3156 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||| ||||| || ||| ||| ||||| || || ||||||||| | Sbjct 3155 GTCTCTCACATCCTTGCCTTCTT-CGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGT 3097 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | || || | |||||||| | || ||||| |||| || ||||| |||||||| Sbjct 3096 TGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGAT 3037 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || |||||||||||||| |||||||| || || || ||||||||| ||||||| Sbjct 3036 CATGATGGAGAACATCCACTCTGAGACCTACTCCCTTCTCATTGACACCTACATCAAGGA 2977 Query 1456068 CCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || | | || | ||| ||||||| |||||| || || | || | | | || | Sbjct 2976 GCCCGCCCAGC-GAACCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGA 2918 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 ||||||||||||| || |||||| | | | || ||| | ||||||| |||| || Sbjct 2917 AGGCCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCT 2860 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243 ||| | ||| || || || ||||| ||||| ||| ||| || || | | | ||||| Sbjct 2859 CGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCTATCTTC 2802 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||| || ||||||||||| || Sbjct 2801 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCT 2770 >seq2635 Length=144039 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||| ||||| || || || || || | || || || || ||||| || | || Sbjct 60457 CCCACACTCTTCAACGCTGGTACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 60516 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||||||||| || || |||||| || || | |||||| Sbjct 60517 ATGAAGGACGACAGTATTGAGGGCATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 60576 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | || ||| | || || | ||| ||||| | Sbjct 60577 AAGATGGCTGGAGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATC 60636 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| ||||||||| |||| || |||||||| || || ||| |||| Sbjct 60637 GCCGGTACCAACGGTACATCCAACGGCGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 60696 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||| ||||| ||| Sbjct 60697 GCTCGCTATGTCGATCAG 60714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177451916903450