Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2635 242 4e-59 >seq2635 Length=144039 Score = 242 bits (268), Expect = 4e-59 Identities = 528/784 (67%), Gaps = 26/784 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | |||||| ||||| || | ||| ||| Sbjct 60349 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 60408 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| || || | ||| | || | |||||| || ||| | || || || ||| Sbjct 60409 TTGGAGACATATAACCTGATGTCCAGCAAATTCTTTACACATGCCTCTCCCACACTCTTC 60468 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||||||||| ||| || || |||| |||||| |||| | |||||||| ||| Sbjct 60469 AACGCTGGTACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 60528 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || ||||||||||| || |||||| |||||| ||||||||| | | || Sbjct 60529 AGTATTGAGGGCATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGA 60588 Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| ||| | || ||| | | | ||||||| | ||| | ||| || || | Sbjct 60589 GGTATTGGTCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTACATCGCCGGTACCA 60646 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 |||| || | || | || |||||||| || |||||||||||||| || || || | Sbjct 60647 ACGGTACATCCAACGGCGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATG 60706 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || | |||||||| ||||| || | || ||||||||||||||||| |||||| Sbjct 60707 TCGATCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACT 60766 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 | || | | ||||| || || || || ||| || ||| | || ||| | || || Sbjct 60767 CTGATGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAAGAGGAGGTCCGTGCCC 60826 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 |||||||||| || || ||||| || || || || ||| | || || ||| ||| Sbjct 60827 GTGACCTGTTCCTCGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACG 60886 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAG 53776 || ||| ||||||||||| ||||||||||| |||||| | | || |||||||||| Sbjct 60887 GTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGTGAG 60945 Query 53777 GAGT---------TTAACGAGATGTATCGGACGTA-CGCAGTTCAGGGCCGCTACAAGAA 53826 |||| | |||| | |||| || | | ||| |||| ||| || Sbjct 60946 GAGTTCGAGGCTCTGTACGAAAAGTATGAGAAGGAGGGCA----AGGGTCGC------AA 60995 Query 53827 GAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAAC 53886 || ||||||| | || | ||| |||| || || || ||| ||||| |||| Sbjct 60996 GACTATCAAGGCTCAGAAGCTTTGGTATGCCATTCTTGAGGCTCAGACTGAGACTGGAAA 61055 Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGT 53946 || | |||| |||||||||| | |||| ||||||||||| |||||| ||||| Sbjct 61056 CCCTTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGCAC 61115 Query 53947 CATC 53950 |||| Sbjct 61116 CATC 61119 Score = 102 bits (112), Expect = 9e-17 Identities = 552/861 (64%), Gaps = 56/861 (7%) Strand=Plus/Plus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||| | ||||| || | | ||||| | ||| ||||||||| | ||||| Sbjct 61237 GACTTCAAGAAGTTGCACGAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCATC 61296 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| ||| ||||||| | ||| ||||| |||| | || ||||| ||||| Sbjct 61297 GACGTGAACCACTACCCTGTCCCGGAGGCTCGCAACAGCAACATGCGCCACCGACCCATT 61356 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTCGACT 55274 | ||||||| |||||| | || || ||| | ||||| | |||||||||| | Sbjct 61357 GGTCTCGGTGTTCAGGGCCTTGCTGATGCTTTCCT--TGCTCTGCGCATGCCCTTCGAGT 61414 Query 55275 CGGAACCT--GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGC 55331 | | || ||||| || | ||| || | |||||| || | ||||||| || || | Sbjct 61415 C--ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATCTACCACGCTGCCC 61471 Query 55332 TCGAGGAGTC-GTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCG 55390 || | || ||| || ||||| | | ||||| ||||| || ||| | || Sbjct 61472 TCACTGCCTCCGTG-CAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTCT 61530 Query 55391 CCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATG 55444 || || |||| | ||||||||||| | ||| | |||| ||||||| | | Sbjct 61531 CCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGG 61590 Query 55445 ---TTTGACA-------AGTTGAAG-CATGACATTCACTTGTGGGGCCTACGCAACTCCC 55493 | || | || |||| || |||| ||| || | || ||| | Sbjct 61591 GACTGGGAGACTCTTCGAGAGGAAGTCAAGACA--CAC------GGTATCCGTAACAGTC 61642 Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553 ||||| | || || ||||| || || || ||||||| |||||||||||||| | Sbjct 61643 TGCTCCTTGCTCCTATGCCTACTGCCAGTACCTCTCAGATTCTGGGCAACAACGAGTGCT 61702 Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613 ||||||| ||||| |||||||||||| ||| || ||| || |||||||| | Sbjct 61703 TCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTCGCTGGTGAGTTCCAGGTTG 61762 Query 55614 TCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAA 55671 ||||| || |||||||||| | || |||| ||| | || || Sbjct 61763 TCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGT--CCGATGCTATGAA 61820 Query 55672 GA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTGCG 55725 || || || |||| ||| || ||| | ||||| || | || ||| Sbjct 61821 GAACCGCATCATTGCTGAGAATGGT---TCCATTCAGAACATTCCCAACATCCCTGCCGA 61877 Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA---AGAGTCTGATTGACAT 55782 | |||||| | || ||| || ||||||||| | ||| || ||| || | || Sbjct 61878 TGTCAAGGCTCTGTATAAGACTGTTTGGGAGATTTCTCAGCGCCAG-GTCG--TTCAGAT 61934 Query 55783 GAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAA 55842 | ||||| || ||||| | ||| || ||||||||||| ||||||||| |||| || | Sbjct 61935 GGCCGCTGACCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGA 61994 Query 55843 TCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGAC 55902 || | ||| |||| | | | ||||||||| || |||||| || |||||||| Sbjct 61995 CCCCACGATGGGCAAGATCACCAGTATGCACTTTGCAGGCTGGAAGCTTGGTCTCAAGAC 62054 Query 55903 GGGTATGTACTATCTGCGGAC 55923 || |||||||| || || || Sbjct 62055 CGGCATGTACTACCTTCGCAC 62075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547190520255000