Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234205.1_202017-07-27] 3,725 sequences; 54,401,289 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2635 325 4e-84 seq3216 176 5e-39 seq186 156 5e-33 seq1635 123 3e-23 seq524 104 3e-17 >seq2635 Length=144039 Score = 325 bits (360), Expect = 4e-84 Identities = 1152/1769 (65%), Gaps = 73/1769 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || ||||||||| | |||| Sbjct 62081 GCCTGTGTGCGAAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCTGCAAAGTGC 62022 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||| ||| ||| | | ||||||| || |||| ||||||||| ||||| |||||| Sbjct 62021 ATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGA 61962 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAAT-TGACTTTTGTGGAATTTCCCA 80210 ||||| || || || || || ||||| | || | || | | | | ||| ||||| Sbjct 61961 TCAATGAAGGCACCTCGGTCAGCGGCCATCTGAACGACCTGGCGCT-GAGAAATCTCCCA 61903 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || ||||| |||| | || | || |||| || | | | | || Sbjct 61902 AACAGTCTTATACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 61846 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||| | || |||| | || |||| || | ||| | ||| | | | || Sbjct 61845 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 61786 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 || || | || | | ||| || | || |||| || |||||| || ||| | Sbjct 61785 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGGACACGTCGCTG 61729 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || ||||||||| || || ||||||| || || Sbjct 61728 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAGGTACT 61669 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | | | ||| || || | ||||| |||||| ||||| Sbjct 61668 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATACCGTGTGTCTTGACTTCCTC 61609 Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553 || | | || | ||| | ||| | ||| |||| |||||||||| | Sbjct 61608 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATGTCGAAC 61554 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||| ||||| || || ||||| ||| ||| || ||| || |||||| |||| Sbjct 61553 TGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTG 61494 Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 ||||||| |||| || | ||||| ||||| || ||| ||| |||| |||||| Sbjct 61493 GCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTT 61435 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 | | || |||| || ||||| | || || || | ||| | ||||| || Sbjct 61434 GAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCAGCAAG 61375 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAA 80791 ||||||||| |||| | || || ||||||||| |||| | | || |||||||| | Sbjct 61374 GCCCTGAACACCGAGACCAATGGGTCGGTGGCGCATGTT-GCTGTTGCGAGCCTCCGGGA 61316 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| ||||||| |||||||||||| |||||||| | | || | Sbjct 61315 CAGGGTAGTGGTTCACGTCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCT 61256 Query 80852 CATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAA---ATGCCGGAAGGCT----C 80904 | || | |||| |||||| | | || | || | ||| ||||||| | Sbjct 61255 CGTGCAACTTCTTGAAGTCGTAGCAGG-CCTCATCGTAGTTGATGAAGGAAGGCAGAGCC 61197 Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTG 80964 || || || || ||||| || || ||||| |||| | | |||||| ||||| ||| Sbjct 61196 AGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTG 61137 Query 80965 CACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAG 81022 |||| ||||| ||| || || || ||||| || ||||| |||| |||||| | Sbjct 61136 CACAGGTTAGAG--CTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGG 61079 Query 81023 CGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCC 81082 | ||||||||| |||| | ||| | || ||||| ||| | || || ||||| | || Sbjct 61078 CATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACC 61019 Query 81083 AAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAG 81142 ||| || | ||||||| |||||| ||||| || | ||||||| |||| Sbjct 61018 AAAGCTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCATACTTTTCGTACA 60959 Query 81143 CTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATC 81201 | ||||||| |||||| | ||| | | |||| | ||||||||||| ||||||||| Sbjct 60958 GAGCCTCGAACTCCTCACCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTTGGGGCACATC 60900 Query 81202 AGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCG 81261 || |||||| || || || ||| |||||| ||| ||||||||||| |||||| Sbjct 60899 AGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCG 60840 Query 81262 GTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAG 81321 ||||||||| ||| || ||||||| | ||| ||||| || | || || || Sbjct 60839 AGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAGGAAC 60780 Query 81322 TCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGA 81375 || | || || | ||||| ||||| || || | ||| | | || | |||| Sbjct 60779 TCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG--- 60723 Query 81376 CGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATA 81435 ||||||||| | ||| || || ||||| ||| || ||||| | |||||| | | Sbjct 60722 TTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACG 60663 Query 81436 CCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGA 81493 || | || |||||| ||||| |||| || || | || || || ||| Sbjct 60662 CCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACG 60603 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 || ||||| || || || | | ||| || ||| ||||| || | || || | Sbjct 60602 TT--CAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGT 60545 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || ||||| || || || | ||||| |||| |||||| || ||||| || |||| Sbjct 60544 AGATGCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTG-GGGC 60486 Query 81614 TTTTTGAG-----CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGA 81668 |||| || || ||||| ||||| || | || || | || | | | || Sbjct 60485 ----TGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGA 60430 Query 81669 CATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTAC 81728 |||||||| ||| || ||| ||| || ||||| ||||| ||||| | || || Sbjct 60429 CATCAGGTTATATGTCTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACAC 60370 Query 81729 ACGCATAAACATGTACTG-GGGCGTCTCG 81756 |||||| | ||||| ||| ||||| |||| Sbjct 60369 ACGCATGATCATGTGCTGAGGGCG-CTCG 60342 >seq3216 Length=359522 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| |||||||| || || |||||| Sbjct 237536 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 237477 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||| || ||||| ||||||||||| |||||||| || || Sbjct 237476 GATACCATTGATAATGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCCGATCAA 237417 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| |||||||| ||||| | || || || | ||||| || Sbjct 237416 CAGCGACTCATCTTTGCTGGCAAGCAACTTGAGGACGGCCGAACTCTTTCCGACTACAAC 237357 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || | || | |||||||| ||||| Sbjct 237356 ATCCAGAAGGAATCTACCCTCCACTTGGTTCTCCGTCTTCGTGGTGG 237310 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || ||||||||||| ||||| |||||||||||| || | || | Sbjct 237752 GTCAAGACCCTCACTGGCAAGACTATCACTCTCGAGGTTGAGTCATCCGACACTATCGAC 237693 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| || ||||| || |||||||| || || Sbjct 237692 AATGTCAAGTCAAAGATCCAGGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATC 237633 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| |||||||| ||||| | || ||||| || ||||| || | || |||||| Sbjct 237632 TTTGCTGGCAAGCAACTTGAGGACGGCCGAACCCTCGCCGACTACAACATTCAGAAGGAA 237573 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||||| ||| | || || || ||||| Sbjct 237572 TCTACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 237538 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || ||||| || || || || |||||||| ||||| || Sbjct 237308 ATGCAGATTTTCGTTAAGACTCTCACCGGAAAAACCATCACCCTTGAGGTCGAGTCCAGT 237249 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| ||| ||||||||||||||||| || || || || ||| Sbjct 237248 GACACTATTGACAACGTGAAGAGTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAG 237189 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| || || ||||||||||| || || |||| ||| ||||| ||| ||||| || Sbjct 237188 CAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGAGC-GACTACAA 237130 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || ||||| || || || | || |||||||| || || Sbjct 237129 CATCCAGAAGGAGTCAACTCTCCACCTCGTTCTCCGACTTCGCGGCGGCCA 237079 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 238049 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 237990 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | || | ||| | || ||||||||||||||||| ||||| || ||| Sbjct 237989 TCCGACACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGAC 237930 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || | || |||||||| ||||| || ||||| | || ||||| | || || Sbjct 237929 CAGCAACGCTTGATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCTGATTAC 237870 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| || |||||||| || || | || || || ||||| Sbjct 237869 AACATTCAGAAGGAGTCTACTCTTCACCTTGTTCTCCGCCTCCGTGGTGG 237820 >seq186 Length=137720 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 100890 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 100949 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 100950 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 101009 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| || Sbjct 101010 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGC-GACTACAA 101068 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 101069 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 101116 >seq1635 Length=55299 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 42747 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 42688 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 42687 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 42628 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| |||||||||| || || || | ||||| || |||| ||| Sbjct 42627 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 42568 Query 27595 G 27595 | Sbjct 42567 G 42567 >seq524 Length=29470 Score = 104 bits (114), Expect = 3e-17 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | || | || || |||| |||||| Sbjct 2921 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 2862 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || || || ||| || || || ||||| || | || ||||| ||| Sbjct 2861 CTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTC 2802 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| || ||| | || || |||||||| |||||||| Sbjct 2801 TGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGT 2742 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 || ||||| |||||| || ||||| Sbjct 2741 GATGAGGGTCTCCACACTGACTTTGC 2716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570283844922000