Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3012 197 2e-45 >seq3012 Length=424931 Score = 197 bits (218), Expect = 2e-45 Identities = 622/956 (65%), Gaps = 12/956 (1%) Strand=Plus/Plus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 ||| || || || || || || ||||| | || | ||| | || || |||||||| Sbjct 43274 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTGCA 43333 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || ||| | |||||| || | || | ||| || ||||| ||| || ||||| Sbjct 43334 CAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 43393 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || | ||||| ||| |||| | || | ||| || | ||| | Sbjct 43394 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAG 43453 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTTTCGTATAGTGTA--TACAA 53946 ||||||| || || ||| | ||| | || ||| ||| | | |||| Sbjct 43454 CTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTCATACTTTTCGTACAG 43510 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 54006 || ||||| || || | | | | | ||||| || || | || ||||||| Sbjct 43511 AGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAG 43570 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 | ||| || |||| | | || || |||||||| |||||||| |||||||| || | Sbjct 43571 TGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCGAG 43630 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 54126 || || || | || | ||||| || || |||||| ||||| |||||| | Sbjct 43631 GAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAGGAACTC 43690 Query 54127 CATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCC 54186 | | |||||| ||||| || || | ||| |||| | | | || || || ||||| || Sbjct 43691 GAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCC 43750 Query 54187 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 54246 |||||||| | || | ||| ||||| || | || | | ||| |||| || || || Sbjct 43751 ACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGTT 43810 Query 54247 GGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGAT 54304 ||||| ||| ||||| |||| ||| ||| ||| | ||||| ||| | | || | Sbjct 43811 GGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA- 43869 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 |||| || || || ||||| || ||||| | || || || | ||||| |||||| Sbjct 43870 -GACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATG 43928 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 ||||| ||||| || ||| |||| | || | || || |||| |||| | || Sbjct 43929 CCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGG 43988 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || || || | || ||||| || || ||||| |||| || | || || Sbjct 43989 GTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCAGGTTA 44048 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || ||||| | || || ||||| || || | || || | |||||||| | Sbjct 44049 TATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATGAT 44107 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| | || || ||||| || || || || | ||||||| ||||| Sbjct 44108 CATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGCTCCAA 44167 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 ||| || || ||||| || | |||| || || || || || | ||| | |||| Sbjct 44168 AGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCGGAGT 44223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593694244277280