Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3012 95.1 3e-14 seq495 86.0 1e-11 >seq3012 Length=424931 Score = 95.1 bits (104), Expect = 3e-14 Identities = 167/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| ||| |||| ||| | | ||||| | ||| | | ||||| ||||| || Sbjct 44226 TGGACTCCGCCATTGTCTATGACCGCGATTTCCAATACCAATACTTTGGCTTCAAGACTT 44167 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 ||||| ||| || |||||||| ||||| || ||||| || || || |||||||||| Sbjct 44166 TGGAGCGATCCTACCTCCTCAAGATTGACGGTAAGATTGTCGAGCGCCCTCAGCACATGA 44107 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACA 248962 | ||||| ||| |||| || || ||||| || ||| | || | ||||| || | Sbjct 44106 TCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTCTTGGAGACATATA 44047 Query 248963 CCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 | ||| || || || | ||||||||| | || || ||||||||||| |||| Sbjct 44046 ACCTGATGTCCAGCAAATTCT---TTACACATGCCTCTCCCACACTCTTCAACGCTGGTA 43990 Query 249020 CC 249021 || Sbjct 43989 CC 43988 >seq495 Length=57216 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/180 (71%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || || ||||||||| || | ||||| |||||||| ||| ||||||| ||||| || Sbjct 50197 TGCCCTCCTTTCAAGATCATCATCCTCGACGAGGCCGACTCCATGACACAAGACGCCCAA 50138 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 || || || ||||| ||||| || || | | || || ||||| ||| | ||| Sbjct 50137 AGTGCACTGCGACGAACCATGGAAACATACAGCAAGATTACTCGATTTTGTCTGATTTGC 50078 Query 254322 AACTACGT--GTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||||| |||| || |||| |||||| || ||| ||| ||| ||||| |||| Sbjct 50077 AACTACGTCACTCGA--ATTATCGACCCGCTTGCCAGTCGATGCAGCAAATTTCGGTTCA 50020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073715689368448