Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3012 181 1e-40 >seq3012 Length=424931 Score = 181 bits (200), Expect = 1e-40 Identities = 617/950 (65%), Gaps = 16/950 (2%) Strand=Plus/Plus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || || || || ||||| | || | ||| | || || |||||||| Sbjct 43274 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTGCA 43333 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 || ||| | ||| || || | || | ||| || ||||| ||| || ||||| Sbjct 43334 CAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 43393 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || ||||| || | ||||| ||| |||||| || | ||| || | ||| | Sbjct 43394 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAA- 43452 Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCT--TTCGTATAGAGTA--TAC 63182 | || ||||||| || || ||| | |||| | || ||| ||| | ||| Sbjct 43453 GCTTCTGAGCCTTGAT---AGTCTTGCGAC-CCTTGCCCTCCTTCTCATACTTTTCGTAC 43508 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 | |||||||| || || | | | | | | ||| || || | || |||||| Sbjct 43509 AGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATC 43568 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 | | ||| || |||| | | || || |||||||| |||||||| |||||||| || Sbjct 43569 AGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCG 43628 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362 | || || || | | | ||||| || || |||||| ||||| |||||| Sbjct 43629 AGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAGGAAC 43688 Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422 | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||| Sbjct 43689 TCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTG 43748 Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || |||||||| | || | ||| ||||| || | || | | ||| |||| || ||| Sbjct 43749 CCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCG 43808 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTG 63540 || ||| |||| |||||||||| ||| ||| ||| | ||||| ||| | | || Sbjct 43809 TTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTC 43868 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | |||| || || || ||||| || ||||| | || || || | || || |||| Sbjct 43869 A--GACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGA 43926 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 |||| || || || || || |||| | || | || || |||| |||| | ||| Sbjct 43927 TGCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAG 43986 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 || || || || || | || ||||| || || ||||| |||| || | || | Sbjct 43987 GGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCAGGT 44046 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATT 63779 | || ||||| | || || ||||| || || | || || | |||||||| Sbjct 44047 TATATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATG 44105 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | |||||||||||| | || ||||| || || || || | | ||||||| ||| Sbjct 44106 ATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGCTCC 44165 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || || ||||| || | |||| || || || || || | ||| Sbjct 44166 AAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAAT 44215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629788581154080