Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3012 228 1e-54 seq2855 122 1e-22 >seq3012 Length=424931 Score = 228 bits (252), Expect = 1e-54 Identities = 633/954 (66%), Gaps = 24/954 (3%) Strand=Plus/Plus Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||| || || || || || || ||||| | || | ||| | |||||||||||||| Sbjct 43274 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTGCA 43333 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || ||| | |||||| || | || | ||| || ||||| ||| || ||||| Sbjct 43334 CAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 43393 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 ||| || || || || || | ||||| ||| |||||| || | ||| || | ||| | Sbjct 43394 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAA- 43452 Query 71883 GACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCT--CTT-TCGTATTGT--GTATA 71936 | || ||||||| || | ||||| | ||| | ||| || || | | ||| | Sbjct 43453 GCTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTCATACTTTTCGTACA 43509 Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACA 71995 | | |||||||| || || | ||| | | | | ||||| || || || || |||| Sbjct 43510 GAGCC--TCGAACTCCTCACCGTA-GCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACA 43566 Query 71996 TCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 ||| || ||| || || | || ||| || || |||||||| |||||||| |||||||| Sbjct 43567 TCAGTGTCCAGTCACCGT--TCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAG 43624 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 || | || || || | || | |||||| || || |||||| ||||| || Sbjct 43625 GGCGAGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAG 43684 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173 |||| | | | |||||| ||||| || || | ||| ||||| | | | || || || || Sbjct 43685 GAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTT 43744 Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233 ||| || |||||||| | || | ||| ||||| || | || | | ||| |||| || Sbjct 43745 GTTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAAC 43804 Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTA 72291 || ||||||| ||| ||||| |||| ||| ||| ||| | ||||| ||| ||| Sbjct 43805 GCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCAC 43864 Query 72292 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 72351 || | |||| || || || ||||| || ||||| | || || || | ||||| Sbjct 43865 GTTCA--GACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCG 43922 Query 72352 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 72411 ||||||||||| ||||| || ||| |||| | || | || || |||| |||| | Sbjct 43923 TAGATGCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGC 43982 Query 72412 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 72471 || || || || || || | || ||||| || || ||||| |||| |||| Sbjct 43983 TGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATC 44042 Query 72472 AGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACG 72530 || || || ||||| | || || ||||| || | || || || | ||||| Sbjct 44043 AGGTTATATGTCTCCAAGACTCGCTCGATATCATCACCCCAG-ATACCAACAGACACACG 44101 Query 72531 CATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTT 72590 ||| | ||| |||||||| | || || ||||| | || || | | ||||||| Sbjct 44102 CATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCG 44161 Query 72591 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||| || || ||||| || | |||| || || || || || | ||| Sbjct 44162 CTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAAT 44215 >seq2855 Length=139020 Score = 122 bits (134), Expect = 1e-22 Identities = 361/552 (65%), Gaps = 10/552 (2%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||| ||||||||||| | | || | |||||||| || || || |||||||| || || Sbjct 125829 GTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACC 125888 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 |||||| || ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 125889 ACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGC 125948 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCA-CTTTTGAG 42254 || ||||||| || | || || | || | | || || ||||| | || | Sbjct 125949 AGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 126007 Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314 |||| |||||||||||| | ||||| || || || ||||| || ||||| ||| || Sbjct 126008 CCCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTC 126067 Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 | || || | || || || || | ||| || | || || || |||| Sbjct 126068 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCAGAGTGGATGT 126127 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 | || || ||||| || ||||||||||| | ||||||| | ||| || || || Sbjct 126128 TCTCCATCATGATCTGGAAGCCGTAGAAACAACGAGCCTCGGGGATCTGGACCTCGCCAC 126187 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 ||||| ||| | | || ||||| || || || ||| ||| || || || || | | Sbjct 126188 TGAATCGCTCAACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAGGCAAGGA 126247 Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATCATTGATATCTT 42551 || | || | | || || | || | || ||||| || | || ||| | Sbjct 126248 TGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCT 126307 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | ||| | || || | ||||| || || || || ||||| || ||||| | || Sbjct 126308 TGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 126367 Query 42612 AGA--TATCATG 42621 ||| ||||||| Sbjct 126368 AGATCTATCATG 126379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671108277261360