Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2855 244 2e-59 seq3012 149 9e-31 seq102 84.2 3e-11 >seq2855 Length=139020 Score = 244 bits (270), Expect = 2e-59 Identities = 568/845 (67%), Gaps = 25/845 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| |||| ||||| ||||| | ||| ||| | ||||| Sbjct 126371 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 126312 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | || |||||| ||||| || | || Sbjct 126311 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 126252 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | |||||||| || | ||| ||||| || |||||||| || || ||||| || Sbjct 126251 CACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTTGAG-CG 126193 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 |||| | ||| | || || |||| |||| ||| ||||| ||||| ||||||| Sbjct 126192 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGTTTCTACGGCTTCCAGATCATGA 126134 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | |||||| | ||||| || | ||||| || ||||||| ||||| || || | Sbjct 126133 TGGAGAACATCCACTCTGAGACCTACTCCCTTCTCATTGACACCTACATCAAGGAGCCCG 126074 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | | ||| | ||||| ||||| || || || | || | || || || ||||| Sbjct 126073 CCCAGCGAACCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGAAGGCC 126015 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || || |||||| | || | | || || | ||| | | || || || Sbjct 126014 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCC 125955 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| || || ||||| |||||||| ||| ||||| | ||||| ||||||||| Sbjct 125954 TTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCAAG 125895 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || ||||||||||| ||||| | |||||| | || ||||| || ||||| Sbjct 125894 AAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGT 125835 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615 || ||| |||||||||| || || | ||| | | | | || | | || Sbjct 125834 CTCCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGGGTCGTGCC 125784 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 ||| | | | | || |||| | || |||||||| | || || || ||||| || Sbjct 125783 AGCAAGCAGATGATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTC 125724 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATA 125735 || || | || || | | | |||||||||| | || ||| |||| || Sbjct 125723 ACTGAGGCTCTCCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTATATT 125664 Query 125736 GAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACAACG 125790 ||||| || || |||||||| || |||| ||||| || ||| | ||||| | Sbjct 125663 GAGTTCGTCGCCGATCGTCTCCT-----TGTTGCTCTTGGCAACGAGAAGGTCTACAAGG 125609 Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 | | || ||||| || |||||| | ||| || || | || ||||||||||| |||| Sbjct 125608 CTACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCG 125549 Query 125851 AGAAG 125855 ||||| Sbjct 125548 AGAAG 125544 >seq3012 Length=424931 Score = 149 bits (164), Expect = 9e-31 Identities = 308/449 (69%), Gaps = 12/449 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 43756 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 43697 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | ||| Sbjct 43696 GTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGAC 43637 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 |||| || || ||| | || ||| | || |||||||| || || |||||| Sbjct 43636 CTGTTCCTCGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACGGTG-- 43579 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || || || |||| |||| || || ||| Sbjct 43578 -ACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGTGAGGAG 43520 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGC 97171 || ||||| |||| || ||| | |||||| | || |||| | || | || Sbjct 43519 TTCGAGGCTCTGTACGAAAAGTATGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGC 43461 Query 97172 ACGAGAA-CTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| || ||| | ||||| | ||| ||||||| |||||||||| || | ||| Sbjct 43460 TC-AGAAGCTTTGGTATGCCATTCTTGA-GGCTCAGACTGAGACTGGAAACCCTTTCATG 43403 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| ||||||||| || | ||||||||| || Sbjct 43402 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGCACCATCCGAAGC 43343 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTA 97318 || || |||||||| |||||| | ||||| Sbjct 43342 TCTAACCTGTGCACTGAAATTATCGAGTA 43314 >seq102 Length=146368 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| | ||||||||| | | ||||||||||||| || ||||||| | || ||||| Sbjct 108794 TTTCCTGTAAAAGATCATGGCACCTCGAGGACCTCTTAGGCTCTTGTGGCTAGTTGTGGT 108735 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCA-A 127219 ||||| || || | ||||| ||||||||||| || | |||| |||| ||| | | Sbjct 108734 TACAATATCGGCGTAGGCGAAGGGACCAGGAATGACCTTTGCTGCAA-CAAGACCGGAGA 108676 Query 127220 TGTGTGCAATATCGGCCA 127237 | || ||||||||||||| Sbjct 108675 TATGGGCAATATCGGCCA 108658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025055697360