Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3012 192 7e-44 >seq3012 Length=424931 Score = 192 bits (212), Expect = 7e-44 Identities = 624/958 (65%), Gaps = 16/958 (2%) Strand=Plus/Plus Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| || || || || || || ||||| | || | ||| | || || |||||||| Sbjct 43274 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTGCA 43333 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 || ||| | ||| || || | || | ||| || ||||| ||| || ||||| Sbjct 43334 CAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 43393 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||| || || ||||| || | ||||| ||| |||||| || | ||| || | ||| | Sbjct 43394 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAA- 43452 Query 63077 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCT--TTCGTATAGTGTA--TAC 63131 | || ||||||| || || ||| | |||| | || ||| ||| | | ||| Sbjct 43453 GCTTCTGAGCCTTGAT---AGTCTTGCGAC-CCTTGCCCTCCTTCTCATACTTTTCGTAC 43508 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 63191 | |||||||| || || | | | | | ||||| || || | || |||||| Sbjct 43509 AGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATC 43568 Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 | | ||| || |||| | | || || |||||||| |||||||| |||||||| || Sbjct 43569 AGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCG 43628 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | || || || | || | ||||| || || |||||| ||||| |||||| Sbjct 43629 AGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAGGAAC 43688 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||| Sbjct 43689 TCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTG 43748 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || |||||||| | || | ||| ||||| || | || | | ||| |||| || ||| Sbjct 43749 CCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCG 43808 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTG 63489 || ||| |||| |||||||||| ||| ||| ||| | ||||| ||| | | || Sbjct 43809 TTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTC 43868 Query 63490 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 | |||| || || || ||||| || ||||| | || || || | || || |||| Sbjct 43869 A--GACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGA 43926 Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609 | ||||| || || || || |||| | || | || || |||| |||| | || Sbjct 43927 TGCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAG 43986 Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 || || || || || | || ||||| || || ||||| |||| || | || | Sbjct 43987 GGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCAGGT 44046 Query 63670 TGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATT 63728 | || ||||| | || || ||||| || || | || || | |||||||| Sbjct 44047 TATATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATG 44105 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 | |||||||||||| | || || ||||| || || || | | ||||||| ||| Sbjct 44106 ATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGCTCC 44165 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 ||||| || || ||||| || | |||| || || || || || | ||| | |||| Sbjct 44166 AAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCGGAGT 44223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622918497707760