Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3012 215 7e-51 >seq3012 Length=424931 Score = 215 bits (238), Expect = 7e-51 Identities = 628/957 (66%), Gaps = 14/957 (1%) Strand=Plus/Plus Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811 ||| || || || || || || ||||| | || | ||| | || || |||||||| Sbjct 43274 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTGCA 43333 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 || ||| | |||||| || | || | ||| || ||||| ||| || ||||| Sbjct 43334 CAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 43393 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 ||| || || ||||| || | ||||| ||| |||||| || | ||| || | ||| | Sbjct 43394 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAA- 43452 Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTTTCGTATAGTGTA--TACA 62987 | || ||||||| || || ||| | ||| | || ||| ||| | | |||| Sbjct 43453 GCTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTCATACTTTTCGTACA 43509 Query 62988 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCA 63047 |||||||| || || | | | | || ||||| || || | || ||||||| Sbjct 43510 GAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCA 43569 Query 63048 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 | ||| || |||| | | || || |||||||| |||||||| |||||||| || | Sbjct 43570 GTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCGA 43629 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 || || || | || | ||||| || || |||||| ||||| |||||| Sbjct 43630 GGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAGGAACT 43689 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||| | Sbjct 43690 CGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGC 43749 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 | |||||||| | || | ||| ||||| || | || | | ||| |||| || || | Sbjct 43750 CACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGT 43809 Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGA 63345 |||||||||| ||||| || | ||| ||| ||| | ||||| ||| | | || Sbjct 43810 TGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTT-- 43867 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 ||||| || || || ||||| || ||||| | || || || | ||||| ||||| Sbjct 43868 CAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 43927 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 |||||| ||||| || ||| |||| | || | || || |||| |||| | || Sbjct 43928 GCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGG 43987 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || || || || | || ||||| || || ||||| |||| || | || || Sbjct 43988 GGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAGAATTTGCTGGACATCAGGTT 44047 Query 63526 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63584 || ||||| | || || ||||| || | || || || | |||||||| | Sbjct 44048 ATATGTCTCCAAGACTCGCTCGATATCATCACCCCAG-ATACCAACAGACACACGCATGA 44106 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||||||||||| | || || ||||| || || || | | ||||||| |||| Sbjct 44107 TCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAGGATCGCTCCA 44166 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 |||| || || ||||| || | |||| || || || || || | ||| | |||| Sbjct 44167 AAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCGGAGT 44223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633602805405600