Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2855 131 3e-25 seq2235 109 1e-18 seq2134 109 1e-18 seq3307 98.7 2e-15 >seq2855 Length=139020 Score = 131 bits (144), Expect = 3e-25 Identities = 384/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| || Sbjct 125548 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTA 125607 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | | Sbjct 125608 GCCTTGTAGACCTTCTCGTTGCCAAGAGCAACAAGGAGACGATCGGCGACGAACTCAATA 125667 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| || | |||||| || | Sbjct 125668 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGGAGAGCCTCAGTGAGG 125727 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 125728 AACTCCTGCTCAATGGTGACGGCATCAGTGATGATGTCCTGGATCATCTGCTTGCTGGCA 125787 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 125788 CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGGAGACCCTC 125840 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||||| ||||||||| | |||||| ||||| | ||||| ||| |||| Sbjct 125841 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTTCTTGAG 125900 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | ||||| || ||| | | |||||| ||| | | ||||| Sbjct 125901 CCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCGAAGGCAAC 125960 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 125961 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 126020 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | || || || || || || | ||||| || | |||| ||| || Sbjct 126021 CTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTCGCTGGGCGGGCTC 126080 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| || || ||||| |||| || |||||| Sbjct 126081 CTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCAGAGTGGATG 126126 >seq2235 Length=204701 Score = 109 bits (120), Expect = 1e-18 Identities = 201/295 (68%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 218516 CTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTC 218575 ||||||| ||| ||| || || ||||| ||| | |||| ||| || || | Sbjct 139929 CTGACTTTATCAACAGAGAACTTATTCTCTTCAGTATGGCTGATAACATGCGATCCATCC 139870 Query 218576 CCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGC 218635 | ||| |||||||| ||||||| ||||||||| || | | |||| |||||| Sbjct 139869 CGTCCGTACTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGA 139810 Query 218636 GGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTG 218695 | ||| |||| |||| | ||||||| | | || |||||||||| |||||| ||| Sbjct 139809 GAAACTTGGTCAAAGACAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCCGAACAGACTG 139750 Query 218696 GCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755 ||||||||||||||| ||| ||| ||| | || | ||| | || ||| ||| | Sbjct 139749 CCTACCATCACGGTGAACAGTCTCTCCAGCAGACTATCATTGGCCTAGCCCAGAACTTCG 139690 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 | || |||||||| |||| ||| |||| || | || |||||||| || Sbjct 139689 TCGGTTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 139635 >seq2134 Length=54328 Score = 109 bits (120), Expect = 1e-18 Identities = 177/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 279316 AGGACGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGC 279375 ||| ||| || ||| |||| ||| ||||||||||| || ||||| ||||| | Sbjct 46558 AGGCCGAGGCCGAGGAGGATGAGGAGGAGGGTGAGGATCTTTGCAACTGTACCTTCTCTC 46617 Query 279376 TCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACC 279435 | || || |||| |||||||| || ||| |||| ||| |||||||||| | | Sbjct 46618 TTGCCTACGGTGCCAAGATTCTTCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGC 46677 Query 279436 GGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAA 279495 | || ||||| |||||||| || | || ||| ||| || ||||||||||| | Sbjct 46678 GTTACGGTCTTTGTGGTCCCAACGGTTCCGGAAAGTCCACCCTCATGCGCGCCATCAACA 46737 Query 279496 ACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCAC 279554 ||| ||| | || || || ||||| ||| |||||| | ||| || | || |||||| Sbjct 46738 ACGAGCAGGTTGAGGGTTTCCCTAA-GCAGAGTGAGGTCAAGACTGTCTTCGTCGAGCAC 46796 Query 279555 GACATCGACTCC 279566 ||| |||||||| Sbjct 46797 GACCTCGACTCC 46808 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||||| || || || ||||| || ||||||||||| ||||| || || Sbjct 47403 TCCCGTATTGCCGTCATCGGTCCTAACGGTGCTGGCAAGTCTACCCTGATCAACGTTCTC 47462 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 ||||| ||| | |||| |||| | | |||| ||||| || || || Sbjct 47463 ACTGGTGAGCTCATCCCCACCCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGCC 47522 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 ||| | |||||||||||| |||||||| ||||| || |||| ||||||| | | Sbjct 47523 TACATTAAGCAGCACGCTTTCGCTCACATCGATAACCATCTCGACAAGACTCCTTCCGAG 47582 Query 280341 TACATTCAGTGGCGCTATGCAAGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | | ||| |||||| ||| | |||| || Sbjct 47583 TACATCCAGTGGCGATTTCAGACTGGTGAGGATCGTGAGACCATGGACCG 47632 >seq3307 Length=374361 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 280168 TTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCG 280227 ||| | |||| || || || ||||| || ||||| || || ||||| |||| || |||| Sbjct 280789 TTGCTATCATCGGCCCTAACGGTGCTGGCAAGTCCACTCTTATCAAGCTCCTTACCGGCG 280848 Query 280228 AGAC---CCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284 |||| || |||| | | ||| |||||| |||||| | || || | |||| Sbjct 280849 AGACTATCCCTACCACCGGAAAG---GTTGAGAAGCACCCCAACCTCCGTATTGGTTACA 280905 Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344 || ||||||||||| | ||| | |||| ||| |||| | ||| |||||||| ||| Sbjct 280906 TCAAGCAGCACGCTTTGGAGCACGTTGAGATGCACTTGGAGAAGACCCCTAACCAGTACC 280965 Query 280345 TTCAGTGGCGCTAT 280358 |||||||||| ||| Sbjct 280966 TTCAGTGGCGTTAT 280979 Score = 84.2 bits (92), Expect = 4e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| ||||| || || || |||||||||||||||||||| || | || || || || | Sbjct 280313 AGTTGGTTCCCTTTCTGGAGGTTGGAAGATGAAGCTGGCACTGGCCCGAGCTATGCTCCA 280372 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 |||||| ||||| || || || || || || || ||||| | || ||||| | || Sbjct 280373 GCGTGCTGATGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 280432 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||||| | ||||| | || | || | ||||| |||||| Sbjct 280433 ATGGCTTGAGAACTACCT--CAAGTCTCATCCCGATATCACTAGTTTGATTGTTTCTCAC 280490 Query 279873 GACTCTGGCTTCCTAGA 279889 |||||||| || || || Sbjct 280491 GACTCTGGATTTCTGGA 280507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027788258479926